View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_6 (Length: 574)
Name: NF20209_low_6
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 12 - 331
Target Start/End: Original strand, 4741704 - 4742024
Alignment:
| Q |
12 |
cacagacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtgatcatcaaaactatttct---aggtaacttaatacccaattaaactaa |
108 |
Q |
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| T |
4741704 |
cacagacctcaaaaacttgttgaagtagaaagttagaaactgttcatttgtcatcatcaaaactatatttttaaggtaatt--attcccaattaaaccaa |
4741801 |
T |
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| Q |
109 |
caaattattgggaaacttgtcacatcatcaaaagacttattttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaatt |
208 |
Q |
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| T |
4741802 |
caaatcagtgggaaacttgtcacatcattaaaagacttcttttgtttgttaatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaatt |
4741901 |
T |
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| Q |
209 |
caaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtatggtccatgggactggaaaattgaagtgcttccgaacaagttca |
308 |
Q |
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| T |
4741902 |
caaaattaggaaaattcaaatgtttacatcactttcactttcaattttactatctatggtccatgggattggaaaactgaagtgcttccgaacaagttca |
4742001 |
T |
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| Q |
309 |
tcgtctatatggaggctaccaaa |
331 |
Q |
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| T |
4742002 |
tcgtctgtatggaggctaccaaa |
4742024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 327 - 559
Target Start/End: Original strand, 4722145 - 4722375
Alignment:
| Q |
327 |
ccaaaatatgataataacttcattgtggattattcgactaggttcaatgaattgcttaagacatagtccatatagacgttccatattacggatcaatgaa |
426 |
Q |
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| T |
4722145 |
ccaaaatatgataataacttcattgtagattattcgacgaggttcaatgaattgcttaagacatagtccatatagacgttccatattacggatcaatgaa |
4722244 |
T |
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| Q |
427 |
tttcttggacttccaagaccaagacaatggatagttacttcattgttaattggttcaatgtaagtagaaacagaatattgcaaagcaaaacaaaggtccc |
526 |
Q |
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| T |
4722245 |
tttcttggacttccaagaccaagacaatggatagttacttcattgttaattggttcaatgt--gtagaaacagaatattgcaaagcaaaacaaaggtccc |
4722342 |
T |
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| Q |
527 |
actcatgtttggatcgaaaaaaccacagacctg |
559 |
Q |
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| T |
4722343 |
actcatgtttggatcgaaaaaaccacagacctg |
4722375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 166 - 331
Target Start/End: Original strand, 4721031 - 4721196
Alignment:
| Q |
166 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtat |
265 |
Q |
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| T |
4721031 |
tgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcactttcaatttcactatgtat |
4721130 |
T |
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| Q |
266 |
ggtccatgggactggaaaattgaagtgcttccgaacaagttcatcgtctatatggaggctaccaaa |
331 |
Q |
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| T |
4721131 |
ggtccatgggactggaaaactgaagtgcttccgaacaagttcatcgtctttatggaggctaccaaa |
4721196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 399 - 558
Target Start/End: Original strand, 4741555 - 4741712
Alignment:
| Q |
399 |
tagacgttccatattacggatcaatgaatttcttggacttccaagaccaagacaatggatagttacttcattgttaatt---ggttcaatgtaagtagaa |
495 |
Q |
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||||| |||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||| ||| |||||| ||||||| ||| |
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| T |
4741555 |
tagacattccatattacggatcaatgaattccatggacttccaagac------aatggatagttacttcattgttgattattggttca-tgtaagtggaa |
4741647 |
T |
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| Q |
496 |
acagaatat--tgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaaaccacagacct |
558 |
Q |
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| T |
4741648 |
acagaatatattgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaaaccacagacct |
4741712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 85
Target Start/End: Original strand, 4742782 - 4742854
Alignment:
| Q |
15 |
agacctcaagaacatgttgaagtagaaagttagaaactgttcatttgtg--atcatcaaaactatttctaggt |
85 |
Q |
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|||||||||||||||||||||||| ||||||||||| | |||| ||||| ||||||||||||||||| |||| |
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| T |
4742782 |
agacctcaagaacatgttgaagtataaagttagaaattattcagttgtgtcatcatcaaaactatttccaggt |
4742854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 251
Target Start/End: Original strand, 4726160 - 4726262
Alignment:
| Q |
148 |
ttttgtttgtt-aatatgctgtgtttagtaaattgatttgccgtttcattcggtttggaattcaaaataaggaaaattcaaatgtttacatcactttcac |
246 |
Q |
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| T |
4726160 |
ttttgtttgtttaatatgc-gagtttagtaaatcgatttgctgtctcattcggtttggaatt-gaaattggaaaaattcagatgtttacaacagtttcac |
4726257 |
T |
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| Q |
247 |
tttca |
251 |
Q |
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||||| |
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| T |
4726258 |
tttca |
4726262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 57 - 128
Target Start/End: Original strand, 4722380 - 4722450
Alignment:
| Q |
57 |
atttgtgatcatcaaaactatttctaggtaacttaatacccaattaaactaacaaattattgggaaacttgt |
128 |
Q |
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| T |
4722380 |
atttgtcatcattaaaactatttccaggtaact-actactcaattaaaccaacaaattagtgggaaacttgt |
4722450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 475 - 558
Target Start/End: Original strand, 4742704 - 4742787
Alignment:
| Q |
475 |
attggttcaatgtaagtagaaacagaatat--tgcaaagcaaaacaaaggtcccactcatgtttggatcgaaaaaaccacagacct |
558 |
Q |
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||||||||| ||| ||| |||||||||||| ||||||||||| ||||||||||||| | ||||||||||||||| ||| |||||| |
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| T |
4742704 |
attggttca-tgtgagtggaaacagaatatattgcaaagcaaa-caaaggtcccacttaggtttggatcgaaaaatccatagacct |
4742787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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