View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_7 (Length: 453)
Name: NF20209_low_7
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 15 - 435
Target Start/End: Original strand, 3407708 - 3408123
Alignment:
| Q |
15 |
cacagaccccgaagtcacaacgccaacaccacaaacctttactgatagtttgaagttcgtctaagaggtaagtaaagtctggtcaacaattgttccattc |
114 |
Q |
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|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
3407708 |
cacaaaccccgaagtcacaacgccaacaccacaaacctctactgatagtttgaagttcgtttaagaggtaagtaaagtctggtcaacaactgttccattc |
3407807 |
T |
|
| Q |
115 |
aggaatcaaactcagatcctagtgaaaaaatcgccttttgatagagctcgtcagtcacttgagctcaattgtttgatttaattgtatccnnnnnnnnaac |
214 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||| |
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| T |
3407808 |
aggaatcaaactcagatcctcgtgaaaaaatcgccttttgatagagctcgtcagtcacttgagttcaattgtttgatttaattgtattcttttttt-aac |
3407906 |
T |
|
| Q |
215 |
aaagggaactttatcgtaatgtgttaaagttgtattgaatacaatcctatttaaaagaggtatttgagtcaataaaaacaaactgatgtgtttaaactaa |
314 |
Q |
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||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3407907 |
aaaaggaactttatcataatgtgttaaagttgtattgaatacaatcctatttaaaagaggtatttgagtcaataaaaac----tgatgtgtttaaactaa |
3408002 |
T |
|
| Q |
315 |
atttgatatactcgtaaagaaatattggtaacaatacccaatgttgtaaaatttaaataagtaaactatataaagatacaatattattaaatactctttg |
414 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3408003 |
atttgatatactcgtaaagaaatattggtaacagtacccaatgttgtaaaatttaaataagtaaactatataaaggtacaatattattaaatactctttg |
3408102 |
T |
|
| Q |
415 |
actatcaagattttgggaaat |
435 |
Q |
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| T |
3408103 |
actatcaagattttgggaaat |
3408123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 5404489 - 5404443
Alignment:
| Q |
80 |
aggtaagtaaagtctggtcaacaattgttccattcaggaatcaaact |
126 |
Q |
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| T |
5404489 |
aggtaagtaaagtctggccaataattgttcccatcaggaatcaaact |
5404443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 34964236 - 34964188
Alignment:
| Q |
79 |
gaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaactc |
127 |
Q |
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|||||||||||||||||||||| ||||||||| | ||||||| ||||| |
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| T |
34964236 |
gaggtaagtaaagtctggtcaataattgttcccattaggaatcgaactc |
34964188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 10007991 - 10008036
Alignment:
| Q |
79 |
gaggtaagtaaagtctggtcaacaattgttccattcaggaatcaaa |
124 |
Q |
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|||||||||||||||| ||||| |||||||||| ||||||||||| |
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| T |
10007991 |
gaggtaagtaaagtcttgtcaagaattgttccaaccaggaatcaaa |
10008036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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