View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_8 (Length: 443)
Name: NF20209_low_8
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 6854864 - 6855059
Alignment:
| Q |
1 |
ttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaataggagaaaacatcccctccaagggttcccttcgcattaggaaatactaca |
100 |
Q |
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| T |
6854864 |
ttgatttgaatttccaagaaagaacacctgatttaagaaatagatcgaataggagaaaacatcccctccaagggttcccttcacattaggaaatactaca |
6854963 |
T |
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| Q |
101 |
acgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaactctaatgaattttgtgcttgtactatatc |
196 |
Q |
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| T |
6854964 |
acgttcaaagatggttctctctatcattttcttcccttatttatacaaaattaacaaaggaaacaactctaatgaattttgtgcttgtactatatc |
6855059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 249 - 433
Target Start/End: Original strand, 6855057 - 6855241
Alignment:
| Q |
249 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
348 |
Q |
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| T |
6855057 |
atcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttctcg |
6855156 |
T |
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| Q |
349 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
433 |
Q |
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| T |
6855157 |
aacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactctgtg |
6855241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 147 - 382
Target Start/End: Complemental strand, 6823258 - 6823024
Alignment:
| Q |
147 |
aaaattaacaaaggaaacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaa |
245 |
Q |
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| T |
6823258 |
aaaattcacaaagggaacaactctaataaattttgtgcttgtactataatcactcaaacctaaaattcctctgaaaagatatgt--ctcctttcataaaa |
6823161 |
T |
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| Q |
246 |
ttcatcccttcaaagcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagctcgaatgactctttc |
345 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| || ||||||||||||||||||||||| |||||| |
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| T |
6823160 |
ttcatcccttcaaagcttgtttttcctttctctttcggatcttcagaacattcttgactatctttttctcttcaaccaagaaagctcgaatgattctttc |
6823061 |
T |
|
| Q |
346 |
tcgaacagcaccaccagataaaacaccaccatatgca |
382 |
Q |
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| T |
6823060 |
tctaacagcgcctccacataaaatactacaatatgca |
6823024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 162 - 330
Target Start/End: Complemental strand, 24245859 - 24245690
Alignment:
| Q |
162 |
aacaactctaatgaattttgtgcttgtactata-tcactcaaacctaaaactcctccaaaaagatatgtatctcctttcataaaattcatcccttcaaag |
260 |
Q |
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|||| ||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||| | |||||| ||| || ||| | | |||||||||| |
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| T |
24245859 |
aacagctctaataaattttgtgcttttactataatcactcaaacctaaaactcctccaaaaagatctttatctcgtttaatgaaacttaacccttcaaag |
24245760 |
T |
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| Q |
261 |
cttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
330 |
Q |
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| T |
24245759 |
cttgcttttcctttgtcttttggatcttcaagactttcttgacgatcttttgctcttcaaccaagaaagc |
24245690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 341 - 429
Target Start/End: Complemental strand, 24245067 - 24244979
Alignment:
| Q |
341 |
ctttctcgaacagcaccaccagataaaacaccaccatatgcaaattttacaatccttctgcttctaggtaactttgatctcttgtactc |
429 |
Q |
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| T |
24245067 |
ctttctctaacagcacctccagataaaactccaccataggcacgattcacagtcctcctgtttctaggtaacctagatctcttgtactc |
24244979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 260 - 330
Target Start/End: Original strand, 2418844 - 2418914
Alignment:
| Q |
260 |
gcttgtttttcctttgtcttttggatcttcaaaacattcttgactatcttttgcttttcaaccaagaaagc |
330 |
Q |
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||||| ||||| ||||| || |||||||||||||| ||||| ||||| ||||||| |||||| | |||||| |
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| T |
2418844 |
gcttgcttttcttttgttttctggatcttcaaaactttcttaactattttttgctcttcaacaaggaaagc |
2418914 |
T |
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