View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20209_low_9 (Length: 428)
Name: NF20209_low_9
Description: NF20209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20209_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Original strand, 20174136 - 20174525
Alignment:
| Q |
17 |
gtaactctatactgttgaaaattctttattaatttggaaagaaaacaaggtttcctaactgattgtttaggctccatgccatttatcatcacatacataa |
116 |
Q |
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| T |
20174136 |
gtaactctgtactgttgaaaattctttattaatttggaaagaaaacaaggtttcctaactgattgtttaggctccatgccatttatcatcacatacataa |
20174235 |
T |
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| Q |
117 |
attaactatatgttatttcatattccatggtcaaaagttgaagttgcttttcatatgatgtatcttgtttttatatctgcagcttttaaaagagtatccc |
216 |
Q |
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| T |
20174236 |
attaactatatgttatttcattttccatggtcaaaagttgaagttgcttttcatatgatgtatcttgtttttatatctgcagcttttaaaagagtatccc |
20174335 |
T |
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| Q |
217 |
agttggaaggcataattccagcagctttggaaacatcacatgctcttgcttatttagtgaaactctgccctacccttccaaatgaaacaaaggttgtggt |
316 |
Q |
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| T |
20174336 |
agttggaaggcataattc---cagctttggaaacatcacatgctcttgcttatttagagaaactctgccctacccttccaaatggaactaaggttgtggt |
20174432 |
T |
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| Q |
317 |
taactgcagtggcagaggggataaggatgttcaaactgctatgaaatacttgaaaatttgaacgtacatgattcagtctccaacatagttgaa |
409 |
Q |
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| T |
20174433 |
taactgcagtggcagaggggataaggatgttcaaactgctatgaaatacttgaaaatttgaaagtacatgattcagtctccaacatagttgaa |
20174525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 288 - 354
Target Start/End: Complemental strand, 18402703 - 18402637
Alignment:
| Q |
288 |
acccttccaaatgaaacaaaggttgtggttaactgcagtggcagaggggataaggatgttcaaactg |
354 |
Q |
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| T |
18402703 |
acccttcctaatgggacaaaggtcgtggttaacttcagtggccgaggtgataaggatgttcaaactg |
18402637 |
T |
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