View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2020_low_1 (Length: 390)

Name: NF2020_low_1
Description: NF2020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2020_low_1
NF2020_low_1
[»] chr4 (39 HSPs)
chr4 (11-375)||(27523192-27523558)
chr4 (11-354)||(27505513-27505857)
chr4 (11-354)||(27486968-27487315)
chr4 (19-354)||(27479894-27480231)
chr4 (11-304)||(27469445-27469739)
chr4 (11-349)||(27525929-27526267)
chr4 (11-234)||(27476672-27476895)
chr4 (22-354)||(27460474-27460801)
chr4 (11-300)||(27513641-27513931)
chr4 (91-288)||(27502011-27502210)
chr4 (11-215)||(27516560-27516764)
chr4 (11-311)||(27473877-27474165)
chr4 (11-216)||(27466806-27467011)
chr4 (11-196)||(27498400-27498585)
chr4 (11-209)||(27500295-27500493)
chr4 (11-196)||(27444764-27444949)
chr4 (11-202)||(27502771-27502962)
chr4 (11-196)||(27431118-27431303)
chr4 (11-195)||(27501302-27501486)
chr4 (11-202)||(27507777-27507968)
chr4 (15-194)||(27557478-27557657)
chr4 (19-173)||(27414297-27414451)
chr4 (28-166)||(27503924-27504062)
chr4 (11-166)||(17970284-17970439)
chr4 (28-165)||(27475580-27475717)
chr4 (25-166)||(27524523-27524664)
chr4 (11-196)||(27554294-27554479)
chr4 (28-166)||(27468327-27468465)
chr4 (11-173)||(27563339-27563501)
chr4 (28-164)||(27514893-27515029)
chr4 (19-166)||(27424514-27424661)
chr4 (12-149)||(27508838-27508975)
chr4 (19-207)||(27567248-27567436)
chr4 (11-166)||(27425797-27425952)
chr4 (11-166)||(27570049-27570204)
chr4 (11-166)||(27585673-27585828)
chr4 (68-204)||(27423264-27423400)
chr4 (52-166)||(27412690-27412804)
chr4 (19-173)||(27559233-27559387)
[»] chr5 (4 HSPs)
chr5 (30-227)||(1759252-1759453)
chr5 (11-202)||(1754206-1754396)
chr5 (11-166)||(1756757-1756912)
chr5 (253-305)||(1759463-1759515)
[»] chr3 (12 HSPs)
chr3 (11-200)||(38028732-38028921)
chr3 (11-200)||(38040047-38040236)
chr3 (11-200)||(38036759-38036948)
chr3 (11-166)||(50904792-50904947)
chr3 (25-196)||(55084785-55084956)
chr3 (19-166)||(38043896-38044043)
chr3 (11-196)||(38024845-38025030)
chr3 (11-196)||(38031297-38031482)
chr3 (11-143)||(38033802-38033934)
chr3 (11-166)||(48840712-48840866)
chr3 (11-166)||(50909945-50910100)
chr3 (11-166)||(50911869-50912024)
[»] chr8 (2 HSPs)
chr8 (11-200)||(21604720-21604909)
chr8 (11-196)||(21607266-21607451)
[»] chr2 (1 HSPs)
chr2 (11-166)||(3073554-3073709)


Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 39)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 11 - 375
Target Start/End: Complemental strand, 27523558 - 27523192
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  27523558 caaagggctatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacttcattccaagaattgttgagcga 27523459  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  27523458 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaatt 27523359  T
Q  211 agctctttgaagatatcgtaggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtc 308  Q
    ||||||||||||||||| |||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27523358 agctctttgaagatatcataggacatgacatagatatttgacccagttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttatc 27523259  T
Q  309 atatttgcttgtaaatatgttcacctcaatgagaagtttattaacacattattactgtgtttttctt 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27523258 atatttgcttgtaaatatgttcacctcaatgagaagtttattaacacattattactgtgtttttctt 27523192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 354
Target Start/End: Complemental strand, 27505857 - 27505513
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |    
T  27505857 caaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacca 27505758  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||| |||||||||||||| | |||||||||||||||||||    
T  27505757 agctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgcagagaagagattttcttagatatcatttctcacttgaattgaatt 27505658  T
Q  211 agctctttgaagatatcgtaggac--atgacagatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtc 308  Q
    ||||||||||||||||| | ||||  |||  ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||    
T  27505657 agctctttgaagatatcattggactaatg-tagatatttgacccatttttgtagcagtttagtttctcacattcaaaagatttaatcttttgttgttatc 27505559  T
Q  309 atatttgcttgtaaatatgttcacctcaatgagaagtttattaaca 354  Q
    ||| ||| ||||||| ||||||| ||||||||||| ||||||||||    
T  27505558 atacttggttgtaaaaatgttcatctcaatgagaaatttattaaca 27505513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 27486968 - 27487315
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| || |||||| | || || ||||||||||||| | |    
T  27486968 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacca 27487067  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattga--- 207  Q
    ||| || ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||       
T  27487068 agctgaagaacaatttgaatatgatcatccaatgggtggtcttactattccttgcaaagaagacattttcttagatattacttctcacttgaattgaatt 27487167  T
Q  208 attagctctttgaagatatcgtaggacatgac--agatatttgaccca-tttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgt 304  Q
    ||||| |||||||||||||| |||||| ||||  |||||| ||||||| |||||||||||||||   |||||||||||||||||||| ||||||||||||    
T  27487168 attagttctttgaagatatcataggac-tgacgtagatatctgacccattttttgtagcagttt-tattctcaccttcaaaagatttaatcttttgttgt 27487265  T
Q  305 tgtcatatttgcttgtaaatatgttcacctcaatgagaagtttattaaca 354  Q
    | ||||| ||| ||||||| ||||||| ||||||||||| ||||||||||    
T  27487266 tatcatacttggttgtaaaaatgttcatctcaatgagaaatttattaaca 27487315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 354
Target Start/End: Original strand, 27479894 - 27480231
Alignment:
Q  19 tatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgagg 118  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||| | ||||||| | |||| ||||    
T  27479894 tatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgagg 27479993  T
Q  119 aacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctcttt 218  Q
    |||||||||||||||| ||||||||||||||||| || ||||||||||  |||||||||||||||||||||| |||||||||||||||||||| || |||    
T  27479994 aacaatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttagatattaattctcacttgaattgaattaccttttt 27480093  T
Q  219 gaagatatcgtaggacatgac--agatatttgaccca-tttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttg 315  Q
    ||||||||| |||||| ||||  || ||||||| ||| ||||||||| ||||||||||||||| ||||||| |||| ||||||||||||| ||||| |||    
T  27480094 gaagatatcataggac-tgacgtagttatttgatccattttttgtagtagtttagtttctcacgttcaaaatatttaatcttttgttgttatcatacttg 27480192  T
Q  316 cttgtaaatatgttcacctcaatgagaagtttattaaca 354  Q
     ||||||| ||||||| ||||||||||| ||||||||||    
T  27480193 gttgtaaaaatgttcatctcaatgagaaatttattaaca 27480231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 11 - 304
Target Start/End: Original strand, 27469445 - 27469739
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||| |||||| |||||||| |    
T  27469445 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctatatcatatttgaagcaaacatcattacaagaactgttgagcca 27469544  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    ||| || ||||||||||||||||| |||||||||||||||||||||||||||||||  ||||| |||||||||||||| || |||||||| |||||||||    
T  27469545 agctgaagaacaatttgaatatgaacatccaatgggtggtctaactattccttgcagagaagaaattttcttagatatcacctctcacttcaattgaatt 27469644  T
Q  211 agctctttgaagatatcgtaggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgt 304  Q
    ||||||||||||||||| |||||| ||||  |||||| |||||||||||||||||| |||||||||  ||||||||||||||||  ||||||||||    
T  27469645 agctctttgaagatatcataggac-tgacgtagatatctgacccatttttgtagcactttagtttcataccttcaaaagattttcacttttgttgt 27469739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 11 - 349
Target Start/End: Complemental strand, 27526267 - 27525929
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  27526267 caaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcca 27526168  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    ||| |||||||||||||||||||| ||||||| ||||||||| |||||||||||||  |||||| |||||||||| || |||||||  ||||||||||||    
T  27526167 agctgaggaacaatttgaatatgatcatccaacgggtggtctcactattccttgcagagaagacgttttcttagagatcacttctcgtttgaattgaatt 27526068  T
Q  211 agctctttgaagatatcgtaggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtc 308  Q
     |||||  ||||||| | || ||  ||||  |||||||||||||||||||||||||||||||||||||||||| | |||| |||||||||||||||| |     
T  27526067 ggctctcggaagataccataaga-ttgacgtagatatttgacccatttttgtagcagtttagtttctcacctttagaaga-tttatcttttgttgttatg 27525970  T
Q  309 atatttgcttgtaaatatgttcacctcaatgagaagtttat 349  Q
    ||| ||| || | || | ||||||||||||||||| |||||    
T  27525969 atacttgtttatgaaaaagttcacctcaatgagaaatttat 27525929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 11 - 234
Target Start/End: Original strand, 27476672 - 27476895
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || ||||| |    
T  27476672 caaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcca 27476771  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    |   |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||| |||||||| |||||||| |||||||||    
T  27476772 aagtgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttggatattacctctcacttaaattgaatt 27476871  T
Q  211 agctctttgaagatatcgtaggac 234  Q
    ||||||||||||||||| ||||||    
T  27476872 agctctttgaagatatcataggac 27476895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 22 - 354
Target Start/End: Original strand, 27460474 - 27460801
Alignment:
Q  22 ctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaac 121  Q
    |||||||||||| |||||||| | |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||| ||||| ||   |||||||    
T  27460474 ctagcagtgtacataggagaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaac 27460573  T
Q  122 aatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaa 221  Q
    ||||||||||||| ||||||||||||||||| || ||||||||||  |||||||||||||| ||||| || |||||||| | ||||||||||||||||||    
T  27460574 aatttgaatatgatcatccaatgggtggtctcaccattccttgcagagaagacattttcttggatatcacctctcacttaatttgaattagctctttgaa 27460673  T
Q  222 gatatcgtaggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtcatatttgcttg 319  Q
    |||||| |||||| ||||  || ||||||||||| |||||||||||||||||||||  |||||| |||| || ||||||||||||| |||||     |||    
T  27460674 gatatcataggac-tgacgtagttatttgaccca-ttttgtagcagtttagtttctatccttcagaaga-ttaatcttttgttgttatcata----gttg 27460766  T
Q  320 taaatatgttcacctcaatgagaagtttattaaca 354  Q
    |||| ||||||| ||||||||||| ||||||||||    
T  27460767 taaaaatgttcatctcaatgagaaatttattaaca 27460801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 11 - 300
Target Start/End: Complemental strand, 27513931 - 27513641
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||  ||||||| |||||||||||||| |||||||||||||||| | |    
T  27513931 caaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacca 27513832  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    ||| || ||||||| ||||||||| ||||||||||||||||| |||||||||||||  |||||  | ||||||||||| ||||||| ||||||||||||     
T  27513831 agctgaagaacaatatgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagtattcttagatatcacttctcgcttgaattgaatc 27513732  T
Q  211 agctctttgaagatatcgtaggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttg 300  Q
    |  ||||||||| || | ||| |  ||||  |||||||||||||| |||||||| ||| |||||||||||||| |||||| ||| |||||||    
T  27513731 aaatctttgaagttagcatagta-ttgacgtagatatttgacccaattttgtagtagtatagtttctcaccttgaaaagagtttctcttttg 27513641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 91 - 288
Target Start/End: Complemental strand, 27502210 - 27502011
Alignment:
Q  91 ttccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatatta 190  Q
    |||||||||||||||| | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||||| |    
T  27502210 ttccaagaattgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctaactattccttgcagagaagacattttcttagatatca 27502111  T
Q  191 cttctcacttgaattgaattagctctttgaagatatcgtaggacatgac--agatatttgaccca-tttttgtagcagtttagtttctcaccttcaaaag 287  Q
    | |||||||| |||||||||||||||||||||||||| |||||| ||||  ||||||||||| || ||||||||||||||||||||||||||||||||||    
T  27502110 cctctcacttaaattgaattagctctttgaagatatcataggac-tgacgtagatatttgacacattttttgtagcagtttagtttctcaccttcaaaag 27502012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 27516764 - 27516560
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||||||||| ||||| |||||| || | |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||||||| | |    
T  27516764 caaagggatatctagctgtgtatgtaggaaaggacatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgttgaacca 27516665  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||  ||||||||||||| |||||| |||||||||||| |    
T  27516664 agctgaggaacaatttgaatatgaccatccaatggggggtctcactattccttgcaaagaagaagttttcttagatatcacttctaacttgaattgaagt 27516565  T
Q  211 agctc 215  Q
    |||||    
T  27516564 agctc 27516560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 11 - 311
Target Start/End: Original strand, 27473877 - 27474165
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||||||||| ||||||||||||||| | |||||| | |||||||| ||| ||||||||||||| ||||  ||||||||||||||| ||||| |    
T  27473877 caaagggatatctagctgtgtacgtaggagaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaatcattccaagaattgctgagcca 27473976  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    |   |||||||||||||||||||| ||||||||||||||||| || |||||||||   |||||| |||||||||| || ||||||| ||||||           
T  27473977 aagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgcggagaagacgttttcttagacatcacttctcgcttgaa------- 27474069  T
Q  211 agctctttgaagatatcgtaggacatgac--agatatttgacccatttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgttgtc 308  Q
          |||||||||||  | ||| ||||  |||||||||||| |||||||||||| |||||||||| ||||||||||||||||  ||||||||||| ||    
T  27474070 ------ttgaagatatcaaaagac-tgacatagatatttgaccaatttttgtagcactttagtttctaaccttcaaaagattttcacttttgttgttatc 27474162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 27466806 - 27467011
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||||||||||||||||||| || | |||||| | |||||||| ||| ||||||||||||| ||||  | |||||||||| || ||||| |    
T  27466806 caaagggatatctagcagtgtacgtaggaaaggagatgaagagatttgtgatccctatatcatatttgaagcaaaaattattccaagaactgctgagcca 27466905  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaatt 210  Q
    |   |||||||||||||||||||| ||||||||||||||||| |||||||||||||  |||||  |||||||||| || ||||||  ||||||||||| |    
T  27466906 aagtgaggaacaatttgaatatgatcatccaatgggtggtctcactattccttgcagagaagaagttttcttagacatcacttctagcttgaattgaagt 27467005  T
Q  211 agctct 216  Q
    ||||||    
T  27467006 agctct 27467011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 27498400 - 27498585
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||||||||| || || |||||| ||||||| || |||||||| ||| ||||||| ||||||||| | || |||||||| ||||||| | |    
T  27498400 caaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacca 27498499  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||   |||||||| ||||||||||| |||||||    
T  27498500 agccgaggaacaattcgaatatgatcatccaatgggtggtctcactattccttgcggagaagacatgttcttagatatcacttctc 27498585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 11 - 209
Target Start/End: Complemental strand, 27500493 - 27500295
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||| || |||||||  ||||||||||||||| ||||| |    
T  27500493 caaaaggatatctagcagtgtacgtaggagagaaaatgaagcgatttgtgatccctatatcatacttaaaccaaagttcattccaagaattgctgagcca 27500394  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaat 209  Q
    | | || ||||| || | |||||||||||||||||||||  | |||||||||||||  |||||| ||||||||||  | ||||||  ||||||||||||    
T  27500393 atctgaagaacagttcggatatgaccatccaatgggtggcatcactattccttgcagagaagaccttttcttagaattcacttcttgcttgaattgaat 27500295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 27444949 - 27444764
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| ||||| ||||| |||||| |||||||| |||||||||| ||  ||||||| |||| |||| | ||||| |||||||| ||||   |    
T  27444949 caaagggatatcttgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatca 27444850  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||||||||||||||| | |||||||||||||||||||||||| || ||||||||||  |||||| |||||||||||||||||||||    
T  27444849 agccgaggaacaattcggatatgaccatccaatgggtggtctcacaattccttgcagagaagacgttttcttagatattacttctc 27444764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 27502962 - 27502771
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||| |||||||| || || || ||||||||||| ||||||||||||||||||||  | ||||||||||| ||||| ||||| ||||| ||| ||||| |    
T  27502962 caaaaggatatcttgccgtttatgtaggagagaagatgaagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagcca 27502863  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttga 202  Q
    ||| | |||| |||||| |||||||||||||||||||||||| |||||||||||  | |||||  ||||| ||||||| ||||||| |||||    
T  27502862 agctgtggaagaatttggatatgaccatccaatgggtggtcttactattccttgtgaagaagattttttcgtagatatcacttctcgcttga 27502771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 27431303 - 27431118
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||| | ||||| || || || ||  |||||||| |||||||||| ||  ||||||| ||||||||| | ||||| |||||||||||||   |    
T  27431303 caaagggatatattgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatca 27431204  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||||||||||||||||| ||||||||||||||  |||||||| || ||||||||||  |||||| |||||||| ||||||||||||    
T  27431203 agccgaggaacaatttggatatgaccatccaaccggtggtctcacaattccttgcagagaagacgttttcttaaatattacttctc 27431118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 27501302 - 27501486
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||| ||||||||| || || |||||| ||||||| ||||||||||| ||  ||||||| || |||||| | |  || ||||| ||||||| | |    
T  27501302 caaagggatgtctagcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaacca 27501401  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttct 195  Q
    ||||||||||||||||||||| || ||||||| ||||||||| ||||||||||| |  |||||||| ||||||||||| ||||||    
T  27501402 agccgaggaacaatttgaatacgatcatccaacgggtggtctcactattccttgtagagaagacatgttcttagatatcacttct 27501486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 27507968 - 27507777
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||| || || |||||||||||||  ||||||||||||||||| |||||  | ||||||||||| ||||| ||| | ||||| ||| | ||| |    
T  27507968 caaagggataccttgcggtgtacgtaggagtaaaaatgaagcggtttgtaattccaatgtcatatttgaatcaaacttcacttcaagagttgctcagcca 27507869  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttga 202  Q
     || |  ||| |||||| |||||||||||||||||||||||| || ||||||||  | |||||  ||||||||||||| ||||||| |||||    
T  27507868 ggctgtcgaagaatttggatatgaccatccaatgggtggtcttacaattccttgtgaagaagatcttttcttagatatcacttctcgcttga 27507777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 27557478 - 27557657
Alignment:
Q  15 gggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagcc 114  Q
    ||||||||| || || || || |||||| |||||||| |||||||||| ||  | ||||| || |||||| | ||||| ||||||||| |||   ||||     
T  27557478 gggatatcttgccgtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagct 27557577  T
Q  115 gaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttc 194  Q
    |||||||||||||||||||  ||||||||||||||||| |||||||| ||||  |||||  ||||||||||||| |||||    
T  27557578 gaggaacaatttgaatatgttcatccaatgggtggtctcactattccatgcagagaagatgttttcttagatatcacttc 27557657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 27414451 - 27414297
Alignment:
Q  19 tatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgagg 118  Q
    ||||| ||||| ||||| ||||| |||||||  ||||||||||||||||||||||| ||||||||| ||||||| ||||||||  | |   || | || |    
T  27414451 tatcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaag 27414352  T
Q  119 aacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaaga 173  Q
    || |||||| |||||| ||||||||||||||||| || ||||| |||| ||||||    
T  27414351 aagaatttggatatgatcatccaatgggtggtcttacaattccgtgcagtgaaga 27414297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 166
Target Start/End: Original strand, 27503924 - 27504062
Alignment:
Q  28 gtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttg 127  Q
    ||||| || ||||||||| ||  |||||||||  ||||||||||||| ||||||||| | ||||| ||||| ||||||||  ||||||||||| | ||||    
T  27503924 gtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttg 27504023  T
Q  128 aatatgaccatccaatgggtggtctaactattccttgca 166  Q
     |||||| |||||||||||||| || || ||||||||||    
T  27504024 gatatgatcatccaatgggtggcctcaccattccttgca 27504062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 17970284 - 17970439
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| || |||||||| |||||| ||||||||||||||||||| |||   ||||| ||||||||||| ||||| ||| | ||| ||||       
T  17970284 caaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcg 17970383  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
     || |||||| |||| | ||| || |||||||||||||| || || ||||||||||    
T  17970384 ggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgca 17970439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 27475717 - 27475580
Alignment:
Q  28 gtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttg 127  Q
    ||||| || ||||||||| ||  |||||||||  ||||||||||||| ||||| ||| | ||||| ||||| ||||||||  ||||||||||| | ||||    
T  27475717 gtgtatgttggagagaaattggcgcggtttgtagttcctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttg 27475618  T
Q  128 aatatgaccatccaatgggtggtctaactattccttgc 165  Q
     |||||| ||||| |||||||| || || |||||||||    
T  27475617 gatatgatcatcccatgggtggcctcaccattccttgc 27475580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 166
Target Start/End: Original strand, 27524523 - 27524664
Alignment:
Q  25 gcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaat 124  Q
    |||||||| || ||||||||| ||| ||||||  |  ||||||||||||||||||||||| | ||||| ||||| |||||||   |||| |||||| | |    
T  27524523 gcagtgtatgttggagagaaactgacgcggttcatagttcctgtatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagt 27524622  T
Q  125 ttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||| |||||| |||||||||||||| || || ||||| ||||    
T  27524623 ttggatatgatcatccaatgggtggcctcaccattccgtgca 27524664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 27554294 - 27554479
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||||||||| || ||||| || || |||||| |||||||||||||||||||  |  | || |  || | |||| | || || ||||||||| |||   |    
T  27554294 caaagggataccttgcagtatatgttggagaggaaatgaagcggtttgtgatatcaatttctttgttaagccaaccatcgtttcaagaattgctgaatca 27554393  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||| ||||||||||||| |||||| ||||||| |||| |||| || |||||||| |  |||||| |||||||||||||||||||||    
T  27554394 agctgaggaacaatttggatatgatcatccaacgggtagtctcacaattccttgtagagaagacgttttcttagatattacttctc 27554479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 166
Target Start/End: Complemental strand, 27468465 - 27468327
Alignment:
Q  28 gtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttg 127  Q
    ||||| || ||||||||| ||  |||||||||  | ||||||||||| || |||||| | ||||| ||||| ||||||||  || |||||||| ||||||    
T  27468465 gtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttg 27468366  T
Q  128 aatatgaccatccaatgggtggtctaactattccttgca 166  Q
     |||||| ||||| |||||||| || || ||||||||||    
T  27468365 gatatgatcatcccatgggtggcctcaccattccttgca 27468327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 27563501 - 27563339
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||||||||| ||||| |||   ||| |  ||||||| || |||||||| ||||||||||| |  || ||||| ||| ||||  |    
T  27563501 caaagggctatcttgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtca 27563402  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaaga 173  Q
    |||||| ||| | |||| |||||| |||||||||||||| || || |||||||||| ||||||    
T  27563401 agccgaagaagagtttggatatgatcatccaatgggtggcctcacaattccttgcactgaaga 27563339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 27514893 - 27515029
Alignment:
Q  28 gtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttg 127  Q
    ||||| || ||||||||| ||  |||||||||  | ||||||||||| ||||| ||| | ||||| ||||| ||||||||  || |||||||| ||||||    
T  27514893 gtgtatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttg 27514992  T
Q  128 aatatgaccatccaatgggtggtctaactattccttg 164  Q
     |||||| ||||| |||||||| || || ||||||||    
T  27514993 gatatgatcatcccatgggtggcctcaccattccttg 27515029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 27424661 - 27424514
Alignment:
Q  19 tatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgagg 118  Q
    ||||| ||||| || || |||||  |||||| ||||||||||||||| |||||||| ||||||||| | ||||| ||||||||| | |   || | || |    
T  27424661 tatctcgcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaag 27424562  T
Q  119 aacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    || ||| || |||||| ||||||||||||||||| || ||||| ||||    
T  27424561 aagaatatggatatgatcatccaatgggtggtcttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 149
Target Start/End: Original strand, 27508838 - 27508975
Alignment:
Q  12 aaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaa 111  Q
    |||||| ||| | |||||||| || ||||||||| ||| ||| |||||  ||||||| ||||||||||||||| | ||||| ||||| |||||||   |     
T  27508838 aaagggctatgttgcagtgtatgttggagagaaactgacgcgttttgtcgttcctgtgtcatatttgaaccaaccttcatttcaagacttgttgaatcag 27508937  T
Q  112 gccgaggaacaatttgaatatgaccatccaatgggtgg 149  Q
    || |||||| | |||| |||||| ||||||| ||||||    
T  27508938 gctgaggaagagtttggatatgatcatccaacgggtgg 27508975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 207
Target Start/End: Original strand, 27567248 - 27567436
Alignment:
Q  19 tatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgagg 118  Q
    ||||| ||||| || || ||||| | |||||  ||||| |||||||| |||||||| ||||||||| | || || ||||||||  | |   || | || |    
T  27567248 tatctcgcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaag 27567347  T
Q  119 aacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattga 207  Q
    || ||||||  ||||| ||||||||||||||||| || ||||||||||  |||||   |||||||||  | ||||||||||||||||||    
T  27567348 aagaatttggttatgatcatccaatgggtggtctcacaattccttgcagcgaagatgctttcttagaactcacttctcacttgaattga 27567436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 27425797 - 27425952
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| ||||| || || |||||||||   ||||||| |||||| ||  ||||||| ||||||||| | ||||| ||||| || |||||  |    
T  27425797 caaagggatatcttgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtca 27425896  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    |   |||||| | |||| |||||| ||||| |||||||| || || ||||||||||    
T  27425897 atttgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgca 27425952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 27570204 - 27570049
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| ||||| || || |||||||||  || ||||| |||||| || |||||||| || | |||| | ||||| ||||| ||| ||||  |    
T  27570204 caaagggatatcttgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtca 27570105  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||| |||||| | || | |||||| ||||| |||||||| || || ||||||||||    
T  27570104 agctgaggaagagttcggatatgatcatcccatgggtggcctcaccattccttgca 27570049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 27585673 - 27585828
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| ||||||| ||| || || |||   ||| | |||||||| || |||||||| ||||||||| | |  || ||||| ||| ||||  |    
T  27585673 caaagggatatctcgcagtgtgcgttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtca 27585772  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    |||||| ||| | |||| |||||| ||||||||||| ||||| || ||||||||||    
T  27585773 agccgaagaagagtttggatatgatcatccaatgggaggtctcaccattccttgca 27585828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 204
Target Start/End: Original strand, 27423264 - 27423400
Alignment:
Q  68 tatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaa 167  Q
    ||||||| ||||||||| | ||||| ||||||||||||||  ||||||||||| | ||||  ||  | ||||| |||||||| || ||  |||||||||     
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggcctcaccgttccttgcac 27423363  T
Q  168 tgaagacattttcttagatattacttctcacttgaat 204  Q
     |||||  |||||  | |||| |||||||||||||||    
T  27423364 ggaagatgttttccaacatataacttctcacttgaat 27423400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 166
Target Start/End: Original strand, 27412690 - 27412804
Alignment:
Q  52 cggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaatttgaatatgaccatccaatgggtggtc 151  Q
    ||||||||||| ||  ||||||| ||||||||| | | ||| ||||| || |||||  |||| || ||| | |||| |||||| |||||||||||||| |    
T  27412690 cggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcc 27412789  T
Q  152 taactattccttgca 166  Q
    | || ||||||||||    
T  27412790 tcaccattccttgca 27412804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 27559387 - 27559233
Alignment:
Q  19 tatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgagg 118  Q
    ||||| ||||| || || ||||| ||||||||| | ||| |||||||| | ||||  ||||| ||| | ||||| ||| | || || ||| || | || |    
T  27559387 tatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaagccaatcagaag 27559288  T
Q  119 aacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaaga 173  Q
    || | |||| |||||| ||||||||||||||||| || |||||||||| ||||||    
T  27559287 aagagtttggatatgatcatccaatgggtggtctcacaattccttgcagtgaaga 27559233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 117; Significance: 2e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 30 - 227
Target Start/End: Original strand, 1759252 - 1759453
Alignment:
Q  30 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagc----gaagccgaggaacaatt 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||     |||| |||||||||||    
T  1759252 gtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttaaaccaaacatcattccaagaattgttgagccaagcaagctgaggaacaatt 1759351  T
Q  126 tgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttgaattgaattagctctttgaagata 225  Q
    ||||||  ||||||||||||||||||| || |||| |||||  |||||  ||||||||||||| |||||||||||||||||||| |||||| |||| |||    
T  1759352 tgaatacaaccatccaatgggtggtctcaccattctttgcagagaagaagttttcttagatatcacttctcacttgaattgaatcagctctctgaaaata 1759451  T
Q  226 tc 227  Q
    ||    
T  1759452 tc 1759453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 11 - 202
Target Start/End: Complemental strand, 1754396 - 1754206
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    |||| ||||||||||| || || || |||||  ||||||||||||||||||| || |||||||| ||||||||| | ||||| ||| ||||| | | | |    
T  1754396 caaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaacaa 1754297  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcacttga 202  Q
    | | |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| |  ||| || ||||||||||||| ||||||| |||||    
T  1754296 atctgaggaacagtttgaatatgatcatccgatgggtggtctcactattccttgtagagaa-accttttcttagatatcacttctcgcttga 1754206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 1756912 - 1756757
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| |||||| | || |||||||||  ||||||||||||||| ||  ||||||| ||||||||| | || || ||| | ||||||||  |    
T  1756912 caaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtca 1756813  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||| || ||| |||||| |||||| || || |||||||| || || ||||||||||    
T  1756812 agctgaagaagaatttggatatgatcaccccatgggtggcctcaccattccttgca 1756757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 1759463 - 1759515
Alignment:
Q  253 atttttgtagcagtttagtttctcaccttcaaaagattttatcttttgttgtt 305  Q
    |||||||||| | |||||||||| ||||||||||||||||  ||||| |||||    
T  1759463 atttttgtagaactttagtttcttaccttcaaaagatttttacttttcttgtt 1759515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 38028921 - 38028732
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||||||||| |||||| |||||||||| ||||| || ||    ||||| ||||||||| | ||||| ||| |  |||||||  |    
T  38028921 caaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtca 38028822  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 200  Q
    |||||||||| |||||| |||||||||||||||||| || || || ||||||||||  |||||| |||||||  ||||||||||||||||    
T  38028821 agccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38028732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 38040236 - 38040047
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||||||||| |||||| |||||||||| ||||| || ||    ||||| ||||||||| | ||||| ||| |  |||||||  |    
T  38040236 caaagggctatcttgcagtgtacgttggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacctgttgagtca 38040137  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 200  Q
    |||||||||| |||| | |||||||||||||||||| || || || ||||||||||  |||||| |||||||  ||||||||||||||||    
T  38040136 agccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 38040047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 38036948 - 38036759
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||||||||| |||||| ||||||| ||||||||  | ||  |  |||| ||||||||| | ||||| ||| | ||||||||  |    
T  38036948 caaagggctatcttgcagtgtacgttggagagcaaatgaaacggtttgttgtccccatgccatacttgaaccaagcttcatttcaaaatttgttgagtca 38036849  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 200  Q
    |||||||||| |||| | |||||||||||||||||| || || || ||||||||||  ||| || |||||||  ||||||||||||||||    
T  38036848 agccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacagaatacgttttcttgcatattacttctcactt 38036759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 50904947 - 50904792
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| ||||||||||| |||||  ||||||||||||||||||| | | | || || ||||||||||| ||||| ||||| ||||||||       
T  50904947 caaagggatatcttgcagtgtacgttggagaagaaatgaagcggtttgtgatccatatgtcctacttgaaccaaacttcatttcaagacttgttgagtcg 50904848  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||| |||||  |||| | |||||| |||||||||||||| || || ||||||||||    
T  50904847 agcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgca 50904792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 25 - 196
Target Start/End: Original strand, 55084785 - 55084956
Alignment:
Q  25 gcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgaggaacaat 124  Q
    |||||||| || |||||||||||||||||||||||||| ||| | || || ||||||||| | ||||| ||||| ||||||||    || |||||| |||    
T  55084785 gcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaat 55084884  T
Q  125 ttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||| ||| || |||||||||||||| || || ||||||||||  |||||  |||||||  ||||||||||||    
T  55084885 ttggatacgatcatccaatgggtggcctcacaattccttgcacagaagatgttttctttcatattacttctc 55084956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 38043896 - 38044043
Alignment:
Q  19 tatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcgaagccgagg 118  Q
    ||||| ||||||||| | |||||| ||||||||||||||||||| ||| | ||||| ||||| ||||| || || ||||| ||| ||||  |||| ||||    
T  38043896 tatcttgcagtgtactttggagaggaaatgaagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagagg 38043995  T
Q  119 aacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    || |||||| |||||| ||||||||||| || || || ||||||||||    
T  38043996 aagaatttggatatgatcatccaatgggcggcctcacaattccttgca 38044043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 38025030 - 38024845
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||| || || |||||| |||||||||||||||| || ||  | ||||| ||||||||| | || || ||| | || |||||  |    
T  38025030 caaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtca 38024931  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||| |||||| |||||| |||||| || ||||||||||| || || ||||||||||  |||||||||||| | || ||||||||||    
T  38024930 agcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctc 38024845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 38031482 - 38031297
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||| || || |||||| |||||||||||||||| || ||  | ||||| ||||||||| | || || ||| | || |||||  |    
T  38031482 caaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtca 38031383  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||| |||||| |||||| |||||| || ||||||||||| || || ||||||||||  |||||||||||| | || ||||||||||    
T  38031382 agcagaggaagaatttggatatgatcacccaatgggtggcctcacgattccttgcacagaagacattttcatggaaattacttctc 38031297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 11 - 143
Target Start/End: Complemental strand, 38033934 - 38033802
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| ||||||||| | |||||| |||||||||||||||| || ||    ||||| ||||||||| | ||||| ||| | ||||||||  |    
T  38033934 caaagggctatcttgcagtgtacattggagagcaaatgaagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtca 38033835  T
Q  111 agccgaggaacaatttgaatatgaccatccaat 143  Q
    |||||||||| |||||| |||||||||||||||    
T  38033834 agccgaggaagaatttggatatgaccatccaat 38033802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 48840866 - 48840712
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| ||| ||||||| |||||| | |||||||| ||||| || ||  |  |||| ||||||||| ||||||| ||||| ||||||||  |    
T  48840866 caaagggatatcttgcattgtacgtcggagaggagatgaagcgatttgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagt-a 48840768  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||  ||| || |||||| |||||| |||||||||||||| || || ||||||||||    
T  48840767 agtggagaaagaatttggatatgatcatccaatgggtggcctcacaattccttgca 48840712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 50909945 - 50910100
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| |||||||| || |||||| |||||  ||||||||| || ||  | ||||| ||||||||| | ||||| ||| | |||||||   |    
T  50909945 caaagggttatcttgcagtgtatgttggagagcaaatgctgcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatca 50910044  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||  |||||| |||||| |||||| |||||||||||||| || || ||||||||||    
T  50910045 agtggaggaagaatttggatatgatcatccaatgggtggcctcacaattccttgca 50910100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 166
Target Start/End: Complemental strand, 50912024 - 50911869
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| || || || || ||||| || ||||| ||||||||||| ||    ||||| ||||||||| | ||||| ||| | ||||||||  |    
T  50912024 caaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtca 50911925  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
    ||| |||||| |||||| |||||| || ||||||||||| ||||| ||||||||||    
T  50911924 agcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgca 50911869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 21604909 - 21604720
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||| ||||| |||||||| ||||||||| |||||||||| ||||| || ||    ||||| ||||||||| | ||||| ||| |  |||||||  |    
T  21604909 caaagggctatcttgcagtgtaagtaggagagcaaatgaagcgatttgttatccccacgtcatacttgaaccaagcttcatttcaaaacatgttgagtca 21604810  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctcactt 200  Q
    || ||||||| |||| | |||||||||||||||||| || || || ||||||||||  |||||| |||||||  ||||||||||||||||    
T  21604809 agacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacagaagacgttttcttgcatattacttctcactt 21604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 196
Target Start/End: Complemental strand, 21607451 - 21607266
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| || || || || |||||| |||||||||||||||| || ||  | ||||| ||||||| | | || || ||| | || |||||  |    
T  21607451 caaagggatatcttgcggtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtca 21607352  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgcaatgaagacattttcttagatattacttctc 196  Q
    ||| |||||| |||||| |||||| || ||||||||||| || ||  |||||||||  ||||| |||||| | || ||||||||||    
T  21607351 agcagaggaagaatttggatatgatcacccaatgggtggcctcacggttccttgcacagaagatattttcatggaaattacttctc 21607266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 11 - 166
Target Start/End: Original strand, 3073554 - 3073709
Alignment:
Q  11 caaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatatttgaaccaaacctcattccaagaattgttgagcga 110  Q
    ||||||||||||| || |||||||| |||||| ||||||||||||||||||| |||   ||||| ||||||||||| ||||| ||| | ||| ||||       
T  3073554 caaagggatatcttgcggtgtacgttggagaggaaatgaagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcg 3073653  T
Q  111 agccgaggaacaatttgaatatgaccatccaatgggtggtctaactattccttgca 166  Q
     || |||||| |||| | ||| || |||||||||||||| || || ||||||||||    
T  3073654 ggcagaggaagaattcggatacgatcatccaatgggtggcctcacaattccttgca 3073709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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