View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2020_low_2 (Length: 224)
Name: NF2020_low_2
Description: NF2020
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2020_low_2 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: scaffold0110 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 30 - 213
Target Start/End: Complemental strand, 28825 - 28642
Alignment:
| Q |
30 |
ttcgtgcttcataacttataataaatatgttagaaaacttacatcaacttttaaactaaatacataaaattgatgtatgtgaactaatacatnnnnnnnt |
129 |
Q |
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| T |
28825 |
ttcgtgcttcataacttgtaataaatatgttggaaaatttacataaaattttaagctaaatacataaaattgatgtatgtgaactaatacataaaaaaat |
28726 |
T |
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| Q |
130 |
atgttagaaaatctacataaactatttttcacgtatctaaatgcatcaatttttcaactatcctcgttgtttacggtatttcat |
213 |
Q |
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| T |
28725 |
gagttagaaaatctacataaactattttttacgtatctaaatgcatcaatttttcaactatcctcgttgtttacggtatttcat |
28642 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9107413 - 9107447
Alignment:
| Q |
1 |
aaattattagctgtgtcggcgtgttagtgttcgtg |
35 |
Q |
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| T |
9107413 |
aaattattagctgtgtcggcgtgttagtgtccgtg |
9107447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 7801199 - 7801231
Alignment:
| Q |
1 |
aaattattagctgtgtcggcgtgttagtgttcg |
33 |
Q |
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| T |
7801199 |
aaattattagttgtgtcggcgtgttagtgttcg |
7801231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 21374742 - 21374776
Alignment:
| Q |
1 |
aaattattagctgtgtcggcgtgttagtgttcgtg |
35 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
21374742 |
aaattattagctgtgtcggcgtgttagtgtccgtg |
21374776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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