View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20210_high_1 (Length: 372)
Name: NF20210_high_1
Description: NF20210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20210_high_1 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 31 - 372
Target Start/End: Original strand, 44130276 - 44130617
Alignment:
| Q |
31 |
aattagcagcctagaaagcttcattgttgtctatagcaggaagggttcaactagtcaaagctgtcatccatggtatgctacttcacacaattcttattta |
130 |
Q |
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| T |
44130276 |
aattagcagcctagaaagcttcattgttgtctatagcaggaagggttcaactagtcaaagttgccatccatggtatgctacttcacacaattcttattta |
44130375 |
T |
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| Q |
131 |
tgcttggccttcctcattgattacagaaatagaaagatatatgaggaattttatatggagtggagacctagacaggaaaaagttggtaattgttgcttgg |
230 |
Q |
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| T |
44130376 |
tgcttggccttcctcattgactaaagaaatagaaagatatattaggaattttatatggagtggagacctatacaagaaaaagttggtaattgttgcttgg |
44130475 |
T |
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| Q |
231 |
aagaaatgttgcttaccttacactgaaggaggccttggtttgaggtcaattgtggttttaaatgaagcttcggatctgaagatgtgctgggacctttgta |
330 |
Q |
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|||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
44130476 |
aagaaatgatgcttaccttactctgaaggaggccttggtttgaggtcaattgtggttttaaatgaagcttcgaatctgaagatctgctgggacctttgta |
44130575 |
T |
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| Q |
331 |
atttagaggagcaatgggccattttgtttagagatagagtga |
372 |
Q |
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||| ||||||||||||||||||||| ||||||||||||||| |
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| T |
44130576 |
attcagaggagcaatgggccattttccttagagatagagtga |
44130617 |
T |
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