View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20210_high_2 (Length: 351)
Name: NF20210_high_2
Description: NF20210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20210_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 75 - 334
Target Start/End: Complemental strand, 11050652 - 11050400
Alignment:
| Q |
75 |
atatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatctcaatgtaatacacatatttataannnnnnn-attgg |
173 |
Q |
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| T |
11050652 |
atatgatacatgaacatcattcttcatgacataaaaaagatactactaattttaattcacatctcaatgtaatacacatatttataattttttttattgg |
11050553 |
T |
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| Q |
174 |
catggacacacttttcgaattttattccctctaaagatctatttctaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagca |
273 |
Q |
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| T |
11050552 |
catggacacacttttcgaattttattccctctaaagatctatttttaattttcaacgaagaaggaaagtgaaatttgatgataaactattccaagaagca |
11050453 |
T |
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| Q |
274 |
tcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaa |
334 |
Q |
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| T |
11050452 |
tcctctctttaatat-ctttcca-------attccatcaactccttaactctctcacccaa |
11050400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 11019711 - 11019438
Alignment:
| Q |
1 |
ctattatgtcatgaagcaaagagcagccacacatannnnnnnnatcagaaaataattccnnnnnnngatacggcatatgatacatgaacatcattcttca |
100 |
Q |
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| T |
11019711 |
ctattatgtcataaagcaaagagcagccacacatattttttt-atcagataataattctgaaaaaagatacgacatatgatgcatgaacatcattcttca |
11019613 |
T |
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| Q |
101 |
tgacataaaaaagatactactaattttaattcacatctcaatgtaatacacatatttataannnnnnn-attggcatggacacacttttcgaattttatt |
199 |
Q |
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| T |
11019612 |
tgacataaaaaagatactactaattttgattcacatctcaatataatacacatatttataattttttttattagcatggacacacttttcgaattttatt |
11019513 |
T |
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| Q |
200 |
ccctctaaagatctatttctaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagcat |
274 |
Q |
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| T |
11019512 |
ccctctaaagatctatttttaattttcaacgaagaaggaaaggggaatttggtgataaactattccaagaagcat |
11019438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 273 - 338
Target Start/End: Complemental strand, 11019345 - 11019280
Alignment:
| Q |
273 |
atcctctctttaatatcctttccatggtccgattccatcaattccttaactctctcacccaactct |
338 |
Q |
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| T |
11019345 |
atcctctctttaatatcctttccacggtccgattccatcaactccttaactctctcacccaactct |
11019280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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