View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20211_high_2 (Length: 202)
Name: NF20211_high_2
Description: NF20211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20211_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 18 - 188
Target Start/End: Complemental strand, 3381438 - 3381268
Alignment:
| Q |
18 |
atgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatgatctttcatggttctag |
117 |
Q |
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| T |
3381438 |
atgagtatgtgtggtattcctaagaggtttcagtatatgacataatcgtttgggattcctgtatcatggtaatatgctttatgatctttcatggttctag |
3381339 |
T |
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| Q |
118 |
tctatacaatagaaactcaacactctcttcgaaggtgcaattctagcacgttagttttaagatgtcctatg |
188 |
Q |
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| T |
3381338 |
tctatacaatagaaactcaacactctcttcgaaggtgcaattctagcacgttagttttaagatgttctatg |
3381268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 1488847 - 1488769
Alignment:
| Q |
72 |
attcctgtatcatggtaatatgctttatgatctttcatggttctagtctatacaatagaaactcaacactctcttcgaagg |
152 |
Q |
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| T |
1488847 |
attcttgtataatggtaatatgcttt--gatctgtcatggttctactctatacaacagaaactcaacactctcttccaagg |
1488769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 189
Target Start/End: Complemental strand, 17379939 - 17379906
Alignment:
| Q |
156 |
aattctagcacgttagttttaagatgtcctatgc |
189 |
Q |
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| T |
17379939 |
aattctagcacgttagttttaagatgttctatgc |
17379906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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