View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20212_high_1 (Length: 562)
Name: NF20212_high_1
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 6 - 544
Target Start/End: Original strand, 3949131 - 3949669
Alignment:
| Q |
6 |
agcagcacagacacaacaaacttataatattaaatgtcaaacagatgcagactgtgaaagccgatgtgatgcaggagtttgcgaaaagaaatgtctcgag |
105 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949131 |
agcagcacaggcacaacaaacttataatattaaatgtcaaacagatgcagactgtgaaagccgatgtgatgcaggagtttgcgaaaagaaatgtctcgag |
3949230 |
T |
|
| Q |
106 |
ttgcctagtatatgcctcaatggccaatgtgcttgtccctttggccctgaacattctgttaccaaaaccttgccaaattcaacatgtgcctttgatgatg |
205 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949231 |
ttgccgagtatatgcctcaatggccaatgtgcttgtccctttggccctgaacactctgttaccaaaaccttgccaaattcaacatgtgcctttgatgatg |
3949330 |
T |
|
| Q |
206 |
attgcttaaagttctgtccttctgcttgcagcattagaagctgtcttgaggctcagtgtcattgtggatgtcatggataggaagcacatttgatgtctat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949331 |
attgcttaaagttctgtccttctgcttgcagcattagaagctgtcttgaggctcagtgtcattgtggatgtcatggataggaagcacatttgatgtctat |
3949430 |
T |
|
| Q |
306 |
gtactattatattgtatgttcatattccatttactaaactacaacaatcctagatttttaataaatatactataaataaaaaggttgatgttaaatgcct |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949431 |
gtactattatattgtatgttcatattccatttactaaactacaacaatcctagatttttaataaatatactataaataaaaaggttgatgttaaatgcct |
3949530 |
T |
|
| Q |
406 |
tagtacttttgagctgcacatttggtacttataggtattactaaggttttaaatcatgactgttgatgttgttgtcgtgtcgtgatttttgatatttcag |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949531 |
tagtacttttgagctgcacatttggtacttataggtattactaaggttttaaatcatgactgttgatgttgttgtcgtgtcgtgatttttgatatttcag |
3949630 |
T |
|
| Q |
506 |
aaaatcgtgtttaaatgacatcgacattgcctcaaatcc |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3949631 |
aaaatcgtgtttaaatgacatcgacattgcctcaaatcc |
3949669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University