View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20212_high_2 (Length: 424)
Name: NF20212_high_2
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_high_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 15 - 393
Target Start/End: Original strand, 10332970 - 10333350
Alignment:
| Q |
15 |
caaagggaaagaagatagagtgttcaaactaaacaaggctctatatagcttgaaatgagaacctagggcctagaatnnnnnnnttgacaaatgctttaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10332970 |
caaagggaaagaagatagagtgttcaaactaaacaaggctctatatagcttgaaatgagaacctagggcctagaataaaaaaattgacaaatgctttaag |
10333069 |
T |
|
| Q |
115 |
aaagaaggatttaagaaatgcattgttgagcatggagtgtatgtaaaaggaagagaagagactagtttacttatcgtatgcttgtatgtggatgatttta |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10333070 |
aaagaaggatttaagaaatgcattgttgagcatggagtgtatgtaaaaggaagagaagagactagtttacttatcgtatgcttgtatgtggatgatttta |
10333169 |
T |
|
| Q |
215 |
tgttgactggaagcaaagttcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatggctggtctagg-aatcttgcatatttcttacg |
313 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||| | |
|
|
| T |
10333170 |
tgttgactggaagataaattcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatgattggtctaggaaagcttgcatatttcttagg |
10333269 |
T |
|
| Q |
314 |
aatggagattctcaaaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagattctgaa-aggttcaatat |
393 |
Q |
| |
|
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
10333270 |
aatagagattctcagaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagatcctgaagaggttcaatat |
10333350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 376
Target Start/End: Original strand, 33684886 - 33685066
Alignment:
| Q |
197 |
tgtatgtggatgattttatgttgactggaagcaaagttcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatggctggtctagg-aa |
295 |
Q |
| |
|
||||||| |||||| ||||| | ||||||||||| | |||| ||| |||| || ||||||||||| ||||| || ||||||||| ||| | |||| || |
|
|
| T |
33684886 |
tgtatgtagatgatcttatgctaactggaagcaacatgtaagacattaaagatttcaaatcagtcataaagtctgagtttgaaatgactgatttaggtaa |
33684985 |
T |
|
| Q |
296 |
tcttgcatatttcttacgaatggagattctcaaaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagat |
376 |
Q |
| |
|
||||||||||| ||| | ||||| ||||| | ||||||||| || |||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
33684986 |
gcttgcatatttattaggcatggaaattcttagaacctcaaagggattgatactccatcaaaccaaatatgctattgagat |
33685066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 376
Target Start/End: Original strand, 33701940 - 33702120
Alignment:
| Q |
197 |
tgtatgtggatgattttatgttgactggaagcaaagttcaagatattgaagagtttaaatcagtcatgaagtcagaatttgaaatggctggtctagg-aa |
295 |
Q |
| |
|
||||||| |||||| ||||| | ||||||||||| | |||| ||| |||| || ||||||||||| ||||| || ||||||||| ||| | |||| || |
|
|
| T |
33701940 |
tgtatgtagatgatcttatgctaactggaagcaacatgtaagacattaaagatttcaaatcagtcataaagtctgagtttgaaatgactgatttaggtaa |
33702039 |
T |
|
| Q |
296 |
tcttgcatatttcttacgaatggagattctcaaaacctcaaaaggcttgatacttcatcagaccaagtatgctactgagat |
376 |
Q |
| |
|
||||||||||| ||| | ||||| ||||| | ||||||||| || |||||||| ||||| ||||| ||||||| |||||| |
|
|
| T |
33702040 |
gcttgcatatttattaggcatggaaattcttagaacctcaaagggattgatactccatcaaaccaaatatgctattgagat |
33702120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University