View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20212_high_5 (Length: 304)
Name: NF20212_high_5
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 29163767 - 29163951
Alignment:
| Q |
14 |
gagacacaaagatcaagacaaacccaaaacctcattcaaaaacaccctaacacatctcctc---aactaaatgcagtcttaacatacaacctt---tctg |
107 |
Q |
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| T |
29163767 |
gagacacaaagatcaagacaaacccaaaacctcgttcaaaaccatcctaacccatctcctccttaactaactacagtcttaacatacaaccttaattcag |
29163866 |
T |
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| Q |
108 |
attaattttttaagttgtatgtgataagaaacaaacttctcctactcagcaactcaaaaaagttgaatatcattaaatttcaatt |
192 |
Q |
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| T |
29163867 |
attaattttttaagttatatgtgataagaaacaaacttctccaactcagcaactcaaaaaagttgaatatcattaaatttcaatt |
29163951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 204 - 278
Target Start/End: Original strand, 29164015 - 29164089
Alignment:
| Q |
204 |
tataaaagattatactagttaatagaaaaattaatattgccaatttattccatcaatcaatatttattgatttga |
278 |
Q |
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| T |
29164015 |
tataaaagattatactagttaatagaaaaattaatattgccaatttattccatcaatcaatatttattgatttga |
29164089 |
T |
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