View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20212_high_9 (Length: 239)
Name: NF20212_high_9
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 28407496 - 28407276
Alignment:
| Q |
1 |
ccaaatcaccaattaggcaaggttgtctgcattcagaagagaaacatcagaaacaagcaaatgttgatcatactattatcatcgcgctcacgcaagaagt |
100 |
Q |
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| T |
28407496 |
ccaaatcaccaattaggcaaggttgtctgcattcagaagagaaacatcagaaacaagcaaatgttgatcatactattatcatcacgctcacgcaagaagt |
28407397 |
T |
|
| Q |
101 |
actagtactagtagtttaattataactactaaaaccatatttcacaaaaatctcttgtttggaacaaatcttaaaatctatgaaatctaattgaattcta |
200 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
28407396 |
accactactagtagtttaattataactactaaaaccatatttcacaaaaatctcttgtttggaacaaatcttaaaatctatgaaatcgaattgaattcta |
28407297 |
T |
|
| Q |
201 |
ccagttggattttggcatgac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
28407296 |
ccagttggattttggcatgac |
28407276 |
T |
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