View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20212_low_10 (Length: 289)

Name: NF20212_low_10
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20212_low_10
NF20212_low_10
[»] chr5 (8 HSPs)
chr5 (1-265)||(29572562-29572825)
chr5 (1-265)||(29573939-29574202)
chr5 (1-265)||(29575316-29575579)
chr5 (1-265)||(29576693-29576956)
chr5 (1-265)||(29578070-29578333)
chr5 (1-265)||(29579447-29579710)
chr5 (63-230)||(23923048-23923215)
chr5 (1-82)||(23923242-23923321)
[»] chr7 (4 HSPs)
chr7 (127-232)||(23054802-23054907)
chr7 (127-214)||(47923910-47923997)
chr7 (123-224)||(5865312-5865413)
chr7 (124-185)||(22819552-22819613)
[»] chr1 (2 HSPs)
chr1 (127-195)||(4422889-4422957)
chr1 (157-185)||(48265586-48265614)
[»] chr3 (3 HSPs)
chr3 (137-234)||(9509949-9510046)
chr3 (137-234)||(9517924-9518021)
chr3 (124-185)||(25132349-25132410)
[»] chr6 (1 HSPs)
chr6 (123-224)||(900688-900789)


Alignment Details
Target: chr5 (Bit Score: 161; Significance: 7e-86; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29572562 - 29572825
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctactatgttc 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29572562 tggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctactatgttc 29572660  T
Q  101 tctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaa 200  Q
    ||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  29572661 tctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaa 29572760  T
Q  201 cattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 265  Q
    | |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29572761 cgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29572825  T

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Target: chr5; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29573939 - 29574202
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctactatgttc 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29573939 tggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctactatgttc 29574037  T
Q  101 tctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaa 200  Q
    ||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  29574038 tctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaa 29574137  T
Q  201 cattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 265  Q
    | |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29574138 cgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29574202  T

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Target: chr5; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29575316 - 29575579
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctactatgttc 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29575316 tggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctactatgttc 29575414  T
Q  101 tctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaa 200  Q
    ||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  29575415 tctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaa 29575514  T
Q  201 cattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 265  Q
    | |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29575515 cgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29575579  T

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Target: chr5; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29576693 - 29576956
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctactatgttc 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29576693 tggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctactatgttc 29576791  T
Q  101 tctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaa 200  Q
    ||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  29576792 tctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaa 29576891  T
Q  201 cattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 265  Q
    | |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29576892 cgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29576956  T

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Target: chr5; HSP #5
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29578070 - 29578333
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctactatgttc 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29578070 tggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctactatgttc 29578168  T
Q  101 tctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaa 200  Q
    ||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  29578169 tctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaa 29578268  T
Q  201 cattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 265  Q
    | |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29578269 cgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29578333  T

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Target: chr5; HSP #6
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 29579447 - 29579710
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtctttagttgctactatgttc 100  Q
    |||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  29579447 tggtttgataggtggttaggagatgtgcttctctgtcagcgttttaggctgttgttt-gatctagcggagaacatgttgtctttagttgctactatgttc 29579545  T
Q  101 tctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaa 200  Q
    ||||||||||            |||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||||||||| || | |||||||||    
T  29579546 tctctaggatggggggagggggtgaggcttggcaatggagaaggatgttgtggatatgggaggaggagttgttagcggagtgtaggatattactttctaa 29579645  T
Q  201 cattattttgcagggtaatgtttccgatcacttgtttcggtatcggccgactgcttggtttgtaa 265  Q
    | |||||||||||||||||||||||||||| |||||| ||||||||  |||||||||||||||||    
T  29579646 cgttattttgcagggtaatgtttccgatcatttgtttgggtatcggttgactgcttggtttgtaa 29579710  T

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Target: chr5; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 63 - 230
Target Start/End: Complemental strand, 23923215 - 23923048
Alignment:
Q  63 tagcggagaacatgttgtctttagttgctactatgttctctctaggatnnnnnnnnnnnntgaggcttggcaatggaggaggaggttatggttatgggag 162  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||| |            |||||||||||| |||||||||||||| ||| | ||||||    
T  23923215 tagcggagaacaagttgtcttcagttgctactatgttccctctaggttggggggagggggtgaggcttggcagtggaggaggaggttgtgggtgtgggag 23923116  T
Q  163 gaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatca 230  Q
    |||||| ||||||||||||||||  ||| |||||||||| |||||||||||| ||||||||| |||||    
T  23923115 gaggagatgttagcggagtgtaggttgttactttctaacgttattttgcaggttaatgtttctgatca 23923048  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 23923321 - 23923242
Alignment:
Q  1 tggtttgataggtggttaggagatgtgcctctttgtcggcgttttaggctgttgttttgatctagcggagaacatgttgtct 82  Q
    |||||||||||||||||||||||||||||| | ||||   ||||||||| ||   |||||  |||||||||||| |||||||    
T  23923321 tggtttgataggtggttaggagatgtgcctttctgtcaatgttttaggcagt--gtttgacttagcggagaacaagttgtct 23923242  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 127 - 232
Target Start/End: Original strand, 23054802 - 23054907
Alignment:
Q  127 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccg 226  Q
    |||||||| |||||||||||||| ||| | ||||||||  || |||||||||||||||| || | |||||||||| ||||| |||||| | || |||| |    
T  23054802 gcttggcagtggaggaggaggttgtgggtgtgggaggaaaagatgttagcggagtgtaggatattactttctaactttattatgcaggttgatatttcgg 23054901  T
Q  227 atcact 232  Q
    ||||||    
T  23054902 atcact 23054907  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 47923997 - 47923910
Alignment:
Q  127 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagg 214  Q
    |||||||| |||||||||||||| ||| | |||||||| ||| |||||| ||||||||  | || |||||||||| || |||||||||    
T  47923997 gcttggcagtggaggaggaggttgtgggtgtgggaggaagagatgttagaggagtgtatgacgttactttctaacgttgttttgcagg 47923910  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Complemental strand, 5865413 - 5865312
Alignment:
Q  123 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 222  Q
    |||||| ||||| |||||| ||| ||| |||   || ||||||||||||||||||||||||||  ||| |||| ||||  ||| |||||||  |||||||    
T  5865413 tgaggcgtggcagtggaggcggatgttgtgggcgtgagaggaggagttgttagcggagtgtaggttgttacttgctaatgttactttgcagattaatgtt 5865314  T
Q  223 tc 224  Q
    ||    
T  5865313 tc 5865312  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Original strand, 22819552 - 22819613
Alignment:
Q  124 gaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtag 185  Q
    ||||| ||||||||| | |||||||| |||   ||||||||||||||||||| |||||||||    
T  22819552 gaggcgtggcaatggcgtaggaggttgtgggcctgggaggaggagttgttaggggagtgtag 22819613  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 4422957 - 4422889
Alignment:
Q  127 gcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactt 195  Q
    |||||||| |||||||||||||| ||| |||| ||||| |||||||||||||||||||| |||| ||||    
T  4422957 gcttggcagtggaggaggaggttgtgggtatgagaggaagagttgttagcggagtgtaggatgttactt 4422889  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 185
Target Start/End: Original strand, 48265586 - 48265614
Alignment:
Q  157 tgggaggaggagttgttagcggagtgtag 185  Q
    |||||||||||||||||||||||||||||    
T  48265586 tgggaggaggagttgttagcggagtgtag 48265614  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 9510046 - 9509949
Alignment:
Q  137 ggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatcacttg 234  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||| || | |||| ||||  ||| ||||| |  || |||||| |||||||||    
T  9510046 ggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctagtgtttcagatcacttg 9509949  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 234
Target Start/End: Complemental strand, 9518021 - 9517924
Alignment:
Q  137 ggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtttccgatcacttg 234  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||||||| || | |||| ||||  ||| ||||| |  || |||||| |||||||||    
T  9518021 ggaggaggaggttgtgggcatgggaggaggagttggtagcggagtgtaggatcttacttgctaatgttactttgctgtctagtgtttcagatcacttg 9517924  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 25132410 - 25132349
Alignment:
Q  124 gaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtag 185  Q
    ||||||||| ||||||| |||||||| ||| | ||||||||||||||  ||| |||||||||    
T  25132410 gaggcttggaaatggagaaggaggttgtgggtgtgggaggaggagttactaggggagtgtag 25132349  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 900688 - 900789
Alignment:
Q  123 tgaggcttggcaatggaggaggaggttatggttatgggaggaggagttgttagcggagtgtagaatgtcactttctaacattattttgcagggtaatgtt 222  Q
    |||||| ||||| || | ||||||||| |||   |||||||| ||||||||||||||||||||  ||| |||| ||||  ||| ||||||||  ||||||    
T  900688 tgaggcgtggcagtgaaagaggaggttgtgggcgtgggaggatgagttgttagcggagtgtaggttgttacttgctaatgttactttgcaggtcaatgtt 900787  T
Q  223 tc 224  Q
    ||    
T  900788 tc 900789  T

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