View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20212_low_14 (Length: 219)
Name: NF20212_low_14
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_low_14 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 22 - 204
Target Start/End: Original strand, 10967768 - 10967950
Alignment:
| Q |
22 |
tttacttacccttgagctctctcaccaaagcaatcactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagttatcttagat |
121 |
Q |
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| T |
10967768 |
tttacttacccttgagctctctcaccaaagcaataactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagttatcttagat |
10967867 |
T |
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| Q |
122 |
tttctcacatatgatgcctcaaaagtcactaccaagcttgatttccccacttacttttacttcacttcaggtgctattgtttt |
204 |
Q |
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| T |
10967868 |
tttctcacatataatgcctcgaaagtcactacaaagcttgaaattcccacttacttttacttcacttcaggtgctattgtttt |
10967950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 11001925 - 11002099
Alignment:
| Q |
23 |
ttacttacccttgagctctctcaccaaagcaatcactatgttcacaatattctccaatccatttccaaaaccacaaacctcaaaggagttatcttagatt |
122 |
Q |
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| T |
11001925 |
ttacttacacttgaagtctcacacaaaagcaaccatcatgttcacaacattctcaactccatttccaaaaccacaaacttcaaaggtattatcttagatt |
11002024 |
T |
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| Q |
123 |
ttctcacatatgatgcctcaaaagtcactaccaagcttgatttccccacttacttttacttcacttcaggtgcta |
197 |
Q |
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| T |
11002025 |
tcctcacctatagtgcctcacaagtcaccaccaaccttgaaattcctacttacttttactatacttcaggtgcta |
11002099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 198
Target Start/End: Original strand, 10981740 - 10981867
Alignment:
| Q |
71 |
attctccaatccatttccaaaaccacaaacctcaaaggagttatcttagattttctcacatatgatgcctcaaaagtcactaccaagcttgatttcccca |
170 |
Q |
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| T |
10981740 |
attctccattctatttccaaaaccacaaacctcaaagctgttatcttagatttcttcacctatagtgcctcacaagtaaccaagaaagtcgagatcccga |
10981839 |
T |
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| Q |
171 |
cttacttttacttcacttcaggtgctat |
198 |
Q |
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| T |
10981840 |
cttacttttattacacttcaggtgctat |
10981867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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