View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20212_low_4 (Length: 355)
Name: NF20212_low_4
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 352
Target Start/End: Original strand, 47494596 - 47494926
Alignment:
| Q |
19 |
ccaaaatcaggaaaaaattgaagccaaatcaagannnnnnnnncttctccaattgtaatttcattaatgaagctgaattagaataataacatataataaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47494596 |
ccaaaatcaggaaaaaattgaagccaaatcaagattttttt---ttctccaattgtaatttcattaatgaagctgaattagaataataacatataataaa |
47494692 |
T |
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| Q |
119 |
agagaaaaatagtggatgaactaactttgagaatccaattgattgcattcaaacgagcacgtttgaaggagtcttcaagcacaacattttcatctttttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47494693 |
agagaaaaatagtggatgaactaactttgagaatccaattgattgcattcaaacgagcacgtttgaaggagtcttcaagcacaacattttcatctttttt |
47494792 |
T |
|
| Q |
219 |
gaatccaaaagcaatctctctttgaagcaataatccaacatgctcctcctcagatacaccaaattcttgaagtgattgattcattgaccattcttcatct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
47494793 |
gaatccaaaagcaatctctctttgaagcaataatccaacatgctcctcctcagatacaccaaattcttgatgtgattgattcattgaccattcttcatct |
47494892 |
T |
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| Q |
319 |
atctcttcaacttccaagcacgtttctttttcat |
352 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
47494893 |
ctctcttcaacttccaagcacgtttctttttcat |
47494926 |
T |
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