View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20212_low_5 (Length: 351)
Name: NF20212_low_5
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 331
Target Start/End: Complemental strand, 52465902 - 52465581
Alignment:
| Q |
13 |
attattctgcaagtctgtttagaatagctacatacaagatgtccggttagtnnnnnnnnnnnn---gtccggttaatatgcctaaaatnnnnnnnn-tgt |
108 |
Q |
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| T |
52465902 |
attattctgcaagtctgtttagaatagttacatacaagatgtccggttagtaaaaaaaaaaaaaatgtc-ggttaatatgcctaaaataaaaaaaaatgt |
52465804 |
T |
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| Q |
109 |
cgggttagtattcatcaccgacctcaagatctatgacaccctttacccgagccacttgctgataaatcattatccagaaacacacatcaacaaacataag |
208 |
Q |
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| T |
52465803 |
ccggttagtattcatcaccgacctcaagatctacgacaccctttacccgagccacttgctgataaatcattgtccagaaacacacatcaacaaacataag |
52465704 |
T |
|
| Q |
209 |
tcttctagaaatatgtttaccacttgataaagatagcttatagaaatatgtcctctattctttcggaaaaaagaaaatatcttctattatcagacgggtt |
308 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52465703 |
tcttctaggaatatgtttaccacttgataaagatagcttatagaaatatgtcctctattctttcggaaaaaagaaaatatcttctatcatcagacgggtt |
52465604 |
T |
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| Q |
309 |
taggtatatgctatcaagaatga |
331 |
Q |
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||||||||||||||||||||||| |
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| T |
52465603 |
taggtatatgctatcaagaatga |
52465581 |
T |
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