View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20212_low_6 (Length: 347)
Name: NF20212_low_6
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 338
Target Start/End: Original strand, 48515304 - 48515621
Alignment:
| Q |
22 |
ccccactagattttattaaaaaccttttcatcgagcaataaggtgatcc-aacataagattgaacataaacaatagtgtccgtagacttgaactattgta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
48515304 |
ccccactagattttattaaaaaccttttcatcgagcaataaggtgatcccaacataagattgaacataaacaatagtgtccgtagacttgaactattgca |
48515403 |
T |
|
| Q |
121 |
tagtgataatgcttccaaatatacaagagtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaggtgtagttcaataacc |
220 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
48515404 |
tagtgataatgcttccgaatatacaagagtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaagtgtagttcaatagcc |
48515503 |
T |
|
| Q |
221 |
cgtgtattacggccatacacgttattccagtgtagtaaacgctctagaaaatttgccaaaatttcataggaagcggccaaacctccacattcacatagtt |
320 |
Q |
| |
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|||| |||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48515504 |
cgtgcattacggccatacacgttatcccagtgtagtaaacgttctagaaaatttgccaaaatttcttaggaagcggccaaacctccacattcacatagtt |
48515603 |
T |
|
| Q |
321 |
gagtctatcaagagtatt |
338 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
48515604 |
gagtctatcaagagtatt |
48515621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 31 - 338
Target Start/End: Complemental strand, 12701716 - 12701410
Alignment:
| Q |
31 |
attttattaaaaaccttttcatcgagcaataaggtgatccaacataagattgaacataaacaatagtgtccgtagacttgaactattgtatagtgataat |
130 |
Q |
| |
|
|||||||||||| | ||||||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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|
| T |
12701716 |
attttattaaaattcatttcatcaagcagtaagataatccaacataagattgaacataaacaatagtgtccgtagacttgaactattgcgtagtgatgat |
12701617 |
T |
|
| Q |
131 |
gcttccaaatatacaagagtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaggtgtagttcaataacccgtgtattac |
230 |
Q |
| |
|
|||| | ||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||| ||||||||| ||| | |||| |
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|
| T |
12701616 |
gctttcgaatatactagagtgactcgtagtcttgaactcaatctcagacaatattacacgctcaatctttcagggtgcagttcaatagcccttacattat |
12701517 |
T |
|
| Q |
231 |
ggccatacacgttattccagtgtagtaaacgctctagaaaatttgccaaaatttcataggaagcggccaaacctccacattcacatagttgagtctatca |
330 |
Q |
| |
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| |||||||||||| || ||||||| ||||||||| || ||| | ||||| | |||||||| |||||||||||||||||||| ||||||||||| |
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| T |
12701516 |
gatcatacacgttatccccgtgtagtgaacgctcta-aatttttttcccaattttacgtgaagcggcaaaacctccacattcacataggtgagtctatca |
12701418 |
T |
|
| Q |
331 |
agagtatt |
338 |
Q |
| |
|
|||||||| |
|
|
| T |
12701417 |
agagtatt |
12701410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 338
Target Start/End: Original strand, 19074859 - 19075125
Alignment:
| Q |
72 |
acataagattgaacataaacaatagtgtccgtagacttgaactattgtatagtgata-atgcttccaaatatacaagagtgactcgtagtcttgaactct |
170 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||||||||| ||||||||||||| |
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|
| T |
19074859 |
acataagattgagcataaacaatattgtccgtagacttgaactattgcgtagtgattgatgctccagaatatactagagtgactcgcagtcttgaactct |
19074958 |
T |
|
| Q |
171 |
atctcagacaacattacacgctcaatctttcaaggtgtagttcaataacccgtgtattacggccatacacgttattccagtgtagtaaacgctctagaaa |
270 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||| || | ||||||||||||| |
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|
| T |
19074959 |
atctctgacaacattacacactcaatctttcaaggtgtagttcaaaagcccgtgccttacggccatacacgttatcccagtataatgaacgctctagaaa |
19075058 |
T |
|
| Q |
271 |
atttgccaaaatttcataggaagcggccaaacctccacattcacatagttgagtctatcaagagtatt |
338 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
19075059 |
ttttgccaaaa-ttattagaaagcggccaaacctccacattcacataggtgagtctatcaagagtatt |
19075125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 72 - 338
Target Start/End: Original strand, 19122749 - 19123015
Alignment:
| Q |
72 |
acataagattgaacataaacaatagtgtccgtagacttgaactattgtatagtgata-atgcttccaaatatacaagagtgactcgtagtcttgaactct |
170 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||||| ||||||| ||||| | ||||||| ||||||||||| ||||||||||||| |
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|
| T |
19122749 |
acataagattgagcataaacaatattgtccgtagacttgaactattgcgtagtgattgatgctccagaatatactagagtgactcgcagtcttgaactct |
19122848 |
T |
|
| Q |
171 |
atctcagacaacattacacgctcaatctttcaaggtgtagttcaataacccgtgtattacggccatacacgttattccagtgtagtaaacgctctagaaa |
270 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||||||||| ||||| || | ||||||||||||| |
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|
| T |
19122849 |
atctctgacaacattacacactcaatctttcaaggtgtagttcaaaagcccgtgccttacggccatacacgttatcccagtataatgaacgctctagaaa |
19122948 |
T |
|
| Q |
271 |
atttgccaaaatttcataggaagcggccaaacctccacattcacatagttgagtctatcaagagtatt |
338 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19122949 |
ttttgccaaaa-ttattagaaagcggccaaacctccacattcacataggtgagtctatcaagagtatt |
19123015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 149 - 338
Target Start/End: Complemental strand, 6789620 - 6789436
Alignment:
| Q |
149 |
gtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaggtgtagttcaataaccc-gtgtattacggccatacacgttattc |
247 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||||||||||| || ||||||||||||| | | ||| ||||||| || ||| |||||| |
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|
| T |
6789620 |
gtgactcgtagttttgaactctatctca----acattacacgctcaatctt-cagagtgtagttcaatagctctgtgcattacggtcaagcacattattc |
6789526 |
T |
|
| Q |
248 |
cagtgtagtaaacgctctagaaaatttgccaaaatttcataggaagcggccaaacctccacattcacatagttgagtctatcaagagtatt |
338 |
Q |
| |
|
| |||||||| | ||||||||||||| |||| ||||||| |||||||||||||||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
6789525 |
taatgtagtaacct-tctagaaaatttgtcaaactttcataagaagcggccaaacctccacattcacaaaggtgagtctattaagagtatt |
6789436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 149 - 338
Target Start/End: Complemental strand, 6786364 - 6786180
Alignment:
| Q |
149 |
gtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaggtgtagttcaataaccc-gtgtattacggccatacacgttattc |
247 |
Q |
| |
|
|||||||||| | ||||||||||||||| ||||||||||||||||||| || |||||||||||||| | ||| ||||||| || ||| |||||| |
|
|
| T |
6786364 |
gtgactcgtacttttgaactctatctca----acattacacgctcaatctt-cagggtgtagttcaatagctttgtgcattacggtcaagcacattattc |
6786270 |
T |
|
| Q |
248 |
cagtgtagtaaacgctctagaaaatttgccaaaatttcataggaagcggccaaacctccacattcacatagttgagtctatcaagagtatt |
338 |
Q |
| |
|
| |||| ||| ||||||| |||||||| |||| ||| |||||||||||||||||||||||||| ||| || ||||||||| ||||||||| |
|
|
| T |
6786269 |
taatgtaataa-cgctctaaaaaatttgtcaaacttttataggaagcggccaaacctccacatttacagaggtgagtctattaagagtatt |
6786180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 24 - 336
Target Start/End: Complemental strand, 14917001 - 14916694
Alignment:
| Q |
24 |
ccactagattttattaaaaaccttttcatcgagcaataaggtgatccaacataagattgaacataaacaatagtgtccgtagacttgaactattgtatag |
123 |
Q |
| |
|
||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||| ||| |
|
|
| T |
14917001 |
ccactggattttattaaaa-ctatttcatcgagcaataaggtgatccaacataagattgaacataaacagtagtgtttatagacatgaactattgcgtag |
14916903 |
T |
|
| Q |
124 |
tgataatgcttccaaatatacaagagtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaggtgtagttcaataacccgt |
223 |
Q |
| |
|
|||| |||||||| | ||||| ||||||| || |||||||||||| ||||||||||||| |||| ||||||||||||||||||||||||| | | ||| |
|
|
| T |
14916902 |
tgatgatgcttccgattatactagagtgattcttagtcttgaactatatctcagacaac---acaccctcaatctttcaaggtgtagttcaaaagcacgt |
14916806 |
T |
|
| Q |
224 |
gtattacggccatacacgttattccagtgtagtaaacgctctagaaaatttgccaaaatttcataggaagcggccaaacctccacattcacatagttgag |
323 |
Q |
| |
|
|| | ||| |||||||||||| |||||| |||| |||||| |||||| || ||||||||||| |||||| ||||||||| |||||||||||| |||| |
|
|
| T |
14916805 |
gtgtcacgaccatacacgtta-tccagtatagtgaacgctttagaaacgctgtcaaaatttcattggaagcagccaaaccttcacattcacataaatgag |
14916707 |
T |
|
| Q |
324 |
tctatcaagagta |
336 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14916706 |
tctatcaagagta |
14916694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 261
Target Start/End: Complemental strand, 21795159 - 21794920
Alignment:
| Q |
22 |
ccccactagattttattaaaaac---cttttcatcgagcaataaggtgatccaacataagattgaacataaacaatagtgtccgtagacttgaactattg |
118 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||| |||| | || |||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
21795159 |
ccccactagattttattaaaaaaaatcatttcatcgagcagtaag-taattcaacataagattgagcataaacaatagtgtccgtagacttgaactattg |
21795061 |
T |
|
| Q |
119 |
tatagtgata-atgcttccaaatatacaagagtgactcgtagtcttgaactctatctcagacaacattacacgctcaatctttcaaggtgtagttcaata |
217 |
Q |
| |
|
||||||| ||||| | ||||||| ||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
21795060 |
cgtagtgattgatgctccagaatatactagagtga---gtagtcttgaactctatctctgacaacattacacactcaatctttcaaggtgtagttcaaag |
21794964 |
T |
|
| Q |
218 |
acccgtgtattacggccatacacgttattccagtgtagtaaacg |
261 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
21794963 |
gcccgtgccttacggccatacacgttatcccagtatagtgaacg |
21794920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 21785401 - 21785321
Alignment:
| Q |
258 |
aacgctctagaaaatttgccaaaatttcataggaagcggccaaacctccacattcacatagttgagtctatcaagagtatt |
338 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| |||| |||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
21785401 |
aacgctctaaaaactttgccaaaatttcatacaaagccgccaaacctccatattcacataggtgagtctatcaagagtatt |
21785321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Complemental strand, 16453006 - 16452950
Alignment:
| Q |
280 |
aatttcataggaagcggccaaacctccacattcacatagttgagtctatcaagagta |
336 |
Q |
| |
|
|||| |||||||||||||| || |||||||||||| || ||||||||||||||||| |
|
|
| T |
16453006 |
aattccataggaagcggccccacttccacattcacaaaggtgagtctatcaagagta |
16452950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 180
Target Start/End: Original strand, 19950771 - 19950805
Alignment:
| Q |
146 |
agagtgactcgtagtcttgaactctatctcagaca |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
|
|
| T |
19950771 |
agagtgactcgtagtcttgaactctatctctgaca |
19950805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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