View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20212_low_7 (Length: 325)
Name: NF20212_low_7
Description: NF20212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20212_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 34572190 - 34572502
Alignment:
| Q |
1 |
gtcaaacaagacatatcttcatctttccaggaccaagccccttcttgcaaatttgttgtcccttgatgttctgctaaatctttcctaaactgtgaatccg |
100 |
Q |
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| T |
34572190 |
gtcaaacaagacatatcttcatctttccaggaccaagccccttcttgcaaatttgttgtcccttgttgttctgctaaatctttcctaaactgtgaatccg |
34572289 |
T |
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| Q |
101 |
gcgcgaaaagaactacattaagattgtatggagatacttcataaatcttatctactaaaataccaccctgtaaattttcaggactttctggttggttatc |
200 |
Q |
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| T |
34572290 |
gcacgaaaagaactacattaagattgtatggagatacttcataaatcttatctactaaaataccaccctgcaaattttcaggactttctggttggttatc |
34572389 |
T |
|
| Q |
201 |
tcttgacagcattagtgcaatgccttcttcaaaactacaagggggtgaattttcttgaacactatcttcgtaatcagacaatgaatttgatgtttctgaa |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572390 |
tcttgactgcattagtgcaatgccttcttcaaaactacaagggggtgaattttcttgaacactatcttcgtaatcagacaatgaatttgatgtttctgaa |
34572489 |
T |
|
| Q |
301 |
caatccacaggtt |
313 |
Q |
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|||||||| |||| |
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| T |
34572490 |
caatccacgggtt |
34572502 |
T |
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