View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20213_high_1 (Length: 596)

Name: NF20213_high_1
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20213_high_1
NF20213_high_1
[»] chr3 (14 HSPs)
chr3 (18-588)||(1717455-1718025)
chr3 (376-588)||(1738952-1739164)
chr3 (18-118)||(1739395-1739495)
chr3 (412-588)||(1754123-1754300)
chr3 (463-588)||(1748807-1748932)
chr3 (20-108)||(1749254-1749342)
chr3 (20-100)||(1754877-1754957)
chr3 (215-296)||(46893416-46893497)
chr3 (215-269)||(13639459-13639513)
chr3 (144-296)||(54186928-54187080)
chr3 (215-296)||(29235677-29235758)
chr3 (215-283)||(48543213-48543281)
chr3 (215-284)||(20909363-20909432)
chr3 (215-247)||(54140812-54140844)
[»] chr8 (6 HSPs)
chr8 (214-296)||(30085447-30085529)
chr8 (215-296)||(33440574-33440655)
chr8 (215-296)||(28700583-28700664)
chr8 (215-293)||(6580862-6580939)
chr8 (217-267)||(31703822-31703872)
chr8 (232-296)||(16895271-16895335)
[»] chr4 (5 HSPs)
chr4 (214-299)||(51475233-51475318)
chr4 (215-283)||(31699549-31699617)
chr4 (215-279)||(37306476-37306540)
chr4 (214-291)||(6540258-6540335)
chr4 (215-269)||(43480299-43480353)
[»] scaffold0922 (1 HSPs)
scaffold0922 (215-282)||(709-776)
[»] chr5 (7 HSPs)
chr5 (215-299)||(41020248-41020332)
chr5 (215-277)||(42958487-42958549)
chr5 (215-283)||(5990589-5990657)
chr5 (215-283)||(18237206-18237274)
chr5 (215-283)||(30892150-30892218)
chr5 (215-283)||(32153763-32153831)
chr5 (198-270)||(34320913-34320985)
[»] chr1 (5 HSPs)
chr1 (215-270)||(932035-932090)
chr1 (223-296)||(11709656-11709729)
chr1 (215-296)||(19078941-19079022)
chr1 (215-296)||(19126829-19126910)
chr1 (217-283)||(14562603-14562669)
[»] chr7 (4 HSPs)
chr7 (214-296)||(17878710-17878792)
chr7 (215-283)||(557447-557515)
chr7 (214-270)||(47822035-47822091)
chr7 (215-296)||(43930030-43930110)
[»] chr2 (5 HSPs)
chr2 (217-283)||(5140042-5140108)
chr2 (223-299)||(864178-864254)
chr2 (215-283)||(6951739-6951808)
chr2 (201-294)||(16011989-16012082)
chr2 (215-283)||(37285185-37285253)
[»] chr6 (2 HSPs)
chr6 (215-296)||(7447636-7447716)
chr6 (216-296)||(32439506-32439586)


Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Complemental strand, 1718025 - 1717455
Alignment:
Q  18 ggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1718025 ggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaa 1717926  T
Q  118 aatttattcatatattcctgaaacagaatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatct 217  Q
    ||||||||||||||||||| |  |||||||||||||||||||||||||||| ||       |||| | || |||||||||||||||||| ||||  ||||    
T  1717925 aatttattcatatattcctcaggcagaatgttaagaacactctcttactaatactttttctaacactcactctcgtattagatgaaatctatatggatct 1717826  T
Q  218 caccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgtacatggcattcctcctta 317  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||||| ||||||| ||||| |||||||    
T  1717825 caccactttatgtatgatccatttccaatatttgatatccacatgaatttcactaaataagaaagtggacgttagagaatgtacatagcatttctcctta 1717726  T
Q  318 gacagaatgctaggaacactcttactagaactttctctaagattcactctccttatttaaaactttgttaaccaattgaattacctactcgaagctgatt 417  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1717725 gacagaatgctaggaacactcttactggcactttctctaagattcactctccttatttaaaactttgttaaccaaatgaattacctactcgaaactgatt 1717626  T
Q  418 tctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagc 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1717625 tctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaatgagccactaggtgtcaatctagatagc 1717526  T
Q  518 ctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 588  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1717525 ttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtc 1717455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 376 - 588
Target Start/End: Complemental strand, 1739164 - 1738952
Alignment:
Q  376 aaaactttgttaaccaattgaattacctactcgaagctgatttctttatacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggagga 475  Q
    ||||||| ||| ||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||    
T  1739164 aaaacttagttcaccaaatgaattacctactcgaaactgatatctttatacatgaattgaacttgtttacagatataataatagaaaaagtttaggagga 1739065  T
Q  476 atagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatactt 575  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||| ||||||||||||| |  ||||||||||||||||||||||||||||||||||||||    
T  1739064 atagagctgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatactt 1738965  T
Q  576 atgtgatgatgtc 588  Q
    ||||||| |||||    
T  1738964 atgtgatcatgtc 1738952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 1739495 - 1739395
Alignment:
Q  18 ggacaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatctatatatctaa 117  Q
    ||||||||||||||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  1739495 ggacaagagatggatatacagaatgggatgattcatacattccacagacagtctctgtcatagagttcttagcaaaaaggttatgtatctatatatctaa 1739396  T
Q  118 a 118  Q
    |    
T  1739395 a 1739395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 412 - 588
Target Start/End: Complemental strand, 1754300 - 1754123
Alignment:
Q  412 ctgatttcttt-atacatgaattgaacttgtttacagatacagtcatagaaaaagtttaggaggaatagagctgatgaataagccactaggtgtcaatct 510  Q
    ||||||||||| |||| ||||||||| ||||  |||| ||  || |||||  ||||||||||||||||||| |||||||| |||||| ||||||||||||    
T  1754300 ctgatttctttgatacttgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatct 1754201  T
Q  511 agatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatgatgtc 588  Q
    ||||||||| ||||| ||||||| ||| ||||||||||  |||||||||||||  |||||| |||||||||| |||||    
T  1754200 agatagcctcaagaaatattacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtc 1754123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 463 - 588
Target Start/End: Complemental strand, 1748932 - 1748807
Alignment:
Q  463 aagtttaggaggaatagagctgatgaataagccactaggtgtcaatctagatagcctgaagaactattacagggaagcttatgatgttgtgaggaaatac 562  Q
    |||||||||||||||||||||||||||| |||||| |||||||||||| ||||| || ||||| ||||||| || ||||||||||| |||||| ||||||    
T  1748932 aagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagtattacaaggcagcttatgatgctgtgagaaaatac 1748833  T
Q  563 atcccaaatacttatgtgatgatgtc 588  Q
    | |||| |  |||||||||| |||||    
T  1748832 aacccagaggcttatgtgatcatgtc 1748807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 1749342 - 1749254
Alignment:
Q  20 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttttgtatcta 108  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||||||||  |||| || || ||||||||| ||||||||||||||||    
T  1749342 acaagagatggatatacagaatggggtgattcttacatacctcagacagtagctgtgattgatttcttagcacaaaggttttgtatcta 1749254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 1754957 - 1754877
Alignment:
Q  20 acaagagatggatatacagaatggggttattcatacattcctcagacagtctctgtcatagaattcttagcaaaaaggttt 100  Q
    ||||||||||||| || |||||||||| | |||||||| ||||||||||||||||||||||| ||| ||||||||||||||    
T  1754957 acaagagatggatttatagaatggggtgaatcatacatacctcagacagtctctgtcatagatttcctagcaaaaaggttt 1754877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 46893416 - 46893497
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||| | |||||||||||   ||||||||||    
T  46893416 tctcaccactttatgtgggatccatttccaatgtgtgttacccacatgaatttcatttaataagagagtgagtgttagagag 46893497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 13639513 - 13639459
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 269  Q
    ||||||||||||||||| |||||||||||||| | ||||| ||||||||||||||    
T  13639513 tctcaccactttatgtgagatccatttccaatgtgtgatacccacatgaatttca 13639459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 144 - 296
Target Start/End: Original strand, 54186928 - 54187080
Alignment:
Q  144 aatgttaagaacactctcttactaacacnnnnnnnaacatttaccctcgtattagatgaaatccatataaatctcaccactttatgtgtgatccatttcc 243  Q
    |||| ||||||||||||||| |||||||       |||||| || ||| |||| | |||||  ||| | |||||||||| |||||||| ||||||||||     
T  54186928 aatgctaagaacactctctttctaacactctctctaacattcactctcctattgggtgaaactcatgtgaatctcaccattttatgtgggatccatttct 54187027  T
Q  244 aatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||| | || || ||||||||| |||||  |||||||||||   ||||||||||    
T  54187028 aatgtgtggtacccacatgaacttcacccaataagagagtgagtgttagagag 54187080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 29235758 - 29235677
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||  |||||||||| ||| | || ||||| ||||||||||||  |||||||||||   ||||||||||    
T  29235758 tctcaccactttatgttggatccatttctaatgtgtggtatcctcatgaatttcacccaataagagagtgagtgttagagag 29235677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 48543213 - 48543281
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    |||||||| |||||||| | |||||||||||| | || || |||||||||||||||  |||||||||||    
T  48543213 tctcaccattttatgtggggtccatttccaatgtatgctacccacatgaatttcacccaataagagagt 48543281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 284
Target Start/End: Original strand, 20909363 - 20909432
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagta 284  Q
    ||||||||||||||||| ||||||||| |||||  || |  |||| ||||||||||  ||||||||||||    
T  20909363 tctcaccactttatgtgggatccattttcaataggtggtgcccacctgaatttcacccaataagagagta 20909432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 247
Target Start/End: Complemental strand, 54140844 - 54140812
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaata 247  Q
    ||||||||||||||||| |||||||||||||||    
T  54140844 tctcaccactttatgtgggatccatttccaata 54140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 214 - 296
Target Start/End: Original strand, 30085447 - 30085529
Alignment:
Q  214 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    |||||||||||||||||| ||||||||||||| || ||| |  ||||||||||||||| ||||||||||||  ||||||||||    
T  30085447 atctcaccactttatgtgggatccatttccaacatgtgacactcacatgaatttcactcaataagagagtaagtgttagagag 30085529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 33440574 - 33440655
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||| ||||||  |||||||||||  |||||||||||    
T  33440574 tctcaccactttatgtgggatccatttccaatgtgtggtacccacatgactttcacccaataagagagtgaatgttagagag 33440655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 28700664 - 28700583
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||| ||| |||||||||||| || || |||||| ||||| ||  |||||||||||   ||||||||||    
T  28700664 tctcaccactttatgtgggattcatttccaatatgtggtacccacataaatttaacccaataagagagtgagtgttagagag 28700583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 293
Target Start/End: Complemental strand, 6580939 - 6580862
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttaga 293  Q
    ||||||||||||||||| |||| ||||||||| | || || |||||||||||||||  |||||||| ||  ||||||||    
T  6580939 tctcaccactttatgtgggatc-atttccaatgtgtggtacccacatgaatttcacccaataagagggtgaatgttaga 6580862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Original strand, 31703822 - 31703872
Alignment:
Q  217 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaattt 267  Q
    ||||||||||||||| |||||||||||||  | |||||||||||| |||||    
T  31703822 tcaccactttatgtgggatccatttccaaagtgtgatatccacattaattt 31703872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 16895335 - 16895271
Alignment:
Q  232 tgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    |||||||||| |||||| || ||||||||||||||| | | |||||||||||   ||||||||||    
T  16895335 tgatccattttcaatatgtggtatccacatgaatttgattcaataagagagtgagtgttagagag 16895271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 214 - 299
Target Start/End: Original strand, 51475233 - 51475318
Alignment:
Q  214 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 299  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||  ||||||||||| | |||||||||||||    
T  51475233 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcacccaataagagagtgggtgttagagagtgt 51475318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 31699549 - 31699617
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    |||||||| |||||||| | |||||||||||| | ||||| |||||||||||||||  |||||||||||    
T  31699549 tctcaccattttatgtggggtccatttccaatgtatgatacccacatgaatttcacccaataagagagt 31699617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 37306476 - 37306540
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataaga 279  Q
    ||||||||||||||||| |||||||||||||| | || || |||||||||||||||  |||||||    
T  37306476 tctcaccactttatgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaga 37306540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 214 - 291
Target Start/End: Complemental strand, 6540335 - 6540258
Alignment:
Q  214 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgtta 291  Q
    ||||||||||||| |||  |||||||||||||| | ||||| ||||||  |||||||  ||||||||||| |||||||    
T  6540335 atctcaccactttgtgtaggatccatttccaatgtatgataaccacattgatttcacccaataagagagtggatgtta 6540258  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 215 - 269
Target Start/End: Complemental strand, 43480353 - 43480299
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttca 269  Q
    ||||||||||||||||| ||||||||| |||| | || || ||||||||||||||    
T  43480353 tctcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttca 43480299  T

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Target: scaffold0922 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 215 - 282
Target Start/End: Complemental strand, 776 - 709
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagag 282  Q
    ||||||||||||||||| ||||||||| |||| | || ||||||||||||||||||| ||||||||||    
T  776 tctcaccactttatgtgggatccattttcaatgtgtggtatccacatgaatttcactcaataagagag 709  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 41020248 - 41020332
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 299  Q
    ||||||||||||||||| ||| |||||||||||| || || ||||||  |||||||  ||||||||||| | |||||||||||||    
T  41020248 tctcaccactttatgtgggattcatttccaatatgtggtacccacatatatttcacccaataagagagtgggtgttagagagtgt 41020332  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 277
Target Start/End: Complemental strand, 42958549 - 42958487
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataa 277  Q
    ||||||||||||||||| ||||||||||||||   || || ||||||||||||||| ||||||    
T  42958549 tctcaccactttatgtgggatccatttccaatgcgtggtacccacatgaatttcaccaaataa 42958487  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 5990589 - 5990657
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    |||||||| |||||||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  5990589 tctcaccattttatgtgggatccatttccaatgtatggtacccacatgaatttcacccaataaaagagt 5990657  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 18237206 - 18237274
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    ||||||||||||||||| |||| |||| |||| | ||||| |||||||||||||||  ||||| |||||    
T  18237206 tctcaccactttatgtgggatctattttcaatgtgtgatacccacatgaatttcacccaataaaagagt 18237274  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 30892218 - 30892150
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    |||||||| |||||||| |||||||||| ||| | || || ||||||||| |||||  |||||||||||    
T  30892218 tctcaccattttatgtgggatccatttctaatgtgtggtacccacatgaacttcaccgaataagagagt 30892150  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 32153763 - 32153831
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    ||||||||||||||||| |||||||||||||  | ||  |||||||||  ||||||  |||||||||||    
T  32153763 tctcaccactttatgtgggatccatttccaaagtgtgggatccacatgggtttcacccaataagagagt 32153831  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 34320913 - 34320985
Alignment:
Q  198 gatgaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 270  Q
    |||||||||||| | | ||||||||||||||||| |||| |||| |||  | || |||||||||| |||||||    
T  34320913 gatgaaatccatgtgagtctcaccactttatgtgggatctattttcaaagtatggtatccacatggatttcac 34320985  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 932090 - 932035
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 270  Q
    ||||||||||||||||| |||||||||||||| | || ||||||||||||||||||    
T  932090 tctcaccactttatgtgggatccatttccaatgtgtggtatccacatgaatttcac 932035  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 296
Target Start/End: Original strand, 11709656 - 11709729
Alignment:
Q  223 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||| |||||||||||||| | || || |||||||||||||||| |||||||||||   ||||||||||    
T  11709656 ctttatgtgggatccatttccaatgtgtggtacccacatgaatttcactcaataagagagtgagtgttagagag 11709729  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 19079022 - 19078941
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19079022 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19078941  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 19126910 - 19126829
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||| |||||||||||||| | || || || ||||| ||||||  |||||||||||   ||||||||||    
T  19126910 tctcaccactttatgtgggatccatttccaatgtgtggtacccgcatgactttcacccaataagagagtgagtgttagagag 19126829  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 14562603 - 14562669
Alignment:
Q  217 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    ||||||||||||||| |||||||||||||  | || || | |||| ||||||||| |||||||||||    
T  14562603 tcaccactttatgtgggatccatttccaaagtgtggtacctacataaatttcactcaataagagagt 14562669  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 214 - 296
Target Start/End: Complemental strand, 17878792 - 17878710
Alignment:
Q  214 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    |||||||||||||||||| |||| ||||| ||| | ||||| |||||||| ||||||  |||||||||||| |||||| ||||    
T  17878792 atctcaccactttatgtgggatctatttctaatgtgtgatacccacatgactttcacccaataagagagtaaatgttaaagag 17878710  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 557447 - 557515
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    ||||||||||||||||| |||||||||  ||| | ||||| ||||||||||||||   |||||||||||    
T  557447 tctcaccactttatgtgggatccatttttaatgtgtgatacccacatgaatttcatccaataagagagt 557515  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 47822091 - 47822035
Alignment:
Q  214 atctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcac 270  Q
    |||||||||||||||||| |||||||||||||| | || || ||||||| |||||||    
T  47822091 atctcaccactttatgtgggatccatttccaatgtgtggtacccacatggatttcac 47822035  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 43930030 - 43930110
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    |||||||||||||| |||||||||||| |||| | || || |||||||||||||||  ||||| |||||   ||||||||||    
T  43930030 tctcaccactttat-tgtgatccattttcaatgtgtggtacccacatgaatttcacccaataaaagagtgagtgttagagag 43930110  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 5140042 - 5140108
Alignment:
Q  217 tcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    ||||||||||||||| ||||||||| |||| | || || |||||||||||||||| |||||||||||    
T  5140042 tcaccactttatgtgggatccattttcaatgtgtggtacccacatgaatttcactcaataagagagt 5140108  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 223 - 299
Target Start/End: Original strand, 864178 - 864254
Alignment:
Q  223 ctttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagagtgt 299  Q
    ||||||||| |||||||||| ||| | || || |||||||||||||||  |||||||||||   |||||||||||||    
T  864178 ctttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagagtgt 864254  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 6951808 - 6951739
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaa-tttcactaaataagagagt 283  Q
    ||||||||||||||||| ||||||||| |||| | ||  | ||||||||| ||||||| |||||||||||    
T  6951808 tctcaccactttatgtgggatccattttcaatgtgtggcacccacatgaattttcactcaataagagagt 6951739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 294
Target Start/End: Original strand, 16011989 - 16012082
Alignment:
Q  201 gaaatccatataaatctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagag 294  Q
    |||||| ||||  ||||||||||||||||| | ||| |||||||| || |  |||||||||| |||| | | ||||||| ||||| ||||||||    
T  16011989 gaaatctatatggatctcaccactttatgtttaatctatttccaaaatgtagtatccacatgtattttattcaataagaaagtaggtgttagag 16012082  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 37285185 - 37285253
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagt 283  Q
    ||||| ||||||| ||| |||||||||||||| | || || |||||||||||||||  ||||| |||||    
T  37285185 tctcatcactttacgtgagatccatttccaatgtgtggtacccacatgaatttcacccaataaaagagt 37285253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 215 - 296
Target Start/End: Original strand, 7447636 - 7447716
Alignment:
Q  215 tctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    ||||||||||||||||| |||||||||| ||| | || || |||||||||||||||  || |||||||| ||||||||||||    
T  7447636 tctcaccactttatgtgggatccatttctaatgtgtggtacccacatgaatttcacccaacaagagagt-gatgttagagag 7447716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 32439586 - 32439506
Alignment:
Q  216 ctcaccactttatgtgtgatccatttccaatatttgatatccacatgaatttcactaaataagagagtagatgttagagag 296  Q
    |||||| ||||||||| |||||||||||||| | || || |||||||||||||||  |||||||||||   ||||||||||    
T  32439586 ctcaccgctttatgtgggatccatttccaatgtgtggtacccacatgaatttcacccaataagagagtgagtgttagagag 32439506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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