View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20213_high_12 (Length: 261)

Name: NF20213_high_12
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20213_high_12
NF20213_high_12
[»] chr5 (8 HSPs)
chr5 (14-222)||(15063189-15063397)
chr5 (171-222)||(5048083-5048134)
chr5 (172-222)||(5046541-5046591)
chr5 (172-222)||(5047312-5047362)
chr5 (24-84)||(5047449-5047509)
chr5 (14-54)||(5664629-5664669)
chr5 (24-84)||(5046678-5046738)
chr5 (14-48)||(5663021-5663055)
[»] chr4 (6 HSPs)
chr4 (14-216)||(28787099-28787301)
chr4 (21-222)||(24853431-24853629)
chr4 (14-82)||(6824842-6824910)
chr4 (111-222)||(51246707-51246818)
chr4 (172-221)||(17525452-17525501)
chr4 (112-222)||(24856322-24856432)
[»] chr2 (1 HSPs)
chr2 (141-222)||(20978765-20978846)
[»] chr1 (1 HSPs)
chr1 (14-212)||(22056355-22056550)
[»] scaffold0406 (1 HSPs)
scaffold0406 (119-222)||(6365-6468)
[»] chr7 (1 HSPs)
chr7 (116-223)||(22622282-22622389)
[»] chr3 (1 HSPs)
chr3 (172-217)||(12738289-12738334)


Alignment Details
Target: chr5 (Bit Score: 181; Significance: 7e-98; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 14 - 222
Target Start/End: Complemental strand, 15063397 - 15063189
Alignment:
Q  14 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 113  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15063397 agaatatatagttggtgacaagaggtcatattttgctacgcccaattaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 15063298  T
Q  114 gctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatat 213  Q
    ||| |||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15063297 gctggtggtagagtggttagtagtatcggactagaggacgcacattagtgatgagcatattgtaggaggtgagaatatgatatggtgaagccttcaatat 15063198  T
Q  214 tattgacat 222  Q
    |||||||||    
T  15063197 tattgacat 15063189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 222
Target Start/End: Complemental strand, 5048134 - 5048083
Alignment:
Q  171 tattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 222  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5048134 tattgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5048083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 5046591 - 5046541
Alignment:
Q  172 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 222  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5046591 attgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5046541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 5047362 - 5047312
Alignment:
Q  172 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 222  Q
    ||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  5047362 attgtaggaggagagaatatgatatggtgaagcctctaatattattgacat 5047312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 5047509 - 5047449
Alignment:
Q  24 gttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatac 84  Q
    |||| ||||| || |||||||||||||| ||| |||||||||||||| |||||||||||||    
T  5047509 gttgatgacacgaagtcatattttgctatgcctagttaatgaccgaatgcagctctgatac 5047449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 5664629 - 5664669
Alignment:
Q  14 agaatatatagttggtgacaagaggtcatattttgctacgc 54  Q
    |||||||||||||||||||| ||||||||||||||||||||    
T  5664629 agaatatatagttggtgacacgaggtcatattttgctacgc 5664669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 84
Target Start/End: Complemental strand, 5046738 - 5046678
Alignment:
Q  24 gttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatac 84  Q
    |||| ||||| || |||||||||||||| ||| ||||||||| |||| |||||||||||||    
T  5046738 gttgatgacacgaagtcatattttgctatgcctagttaatgatcgaatgcagctctgatac 5046678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 48
Target Start/End: Original strand, 5663021 - 5663055
Alignment:
Q  14 agaatatatagttggtgacaagaggtcatattttg 48  Q
    |||||||||||||||||||| ||||||||||||||    
T  5663021 agaatatatagttggtgacacgaggtcatattttg 5663055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 5e-34; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 14 - 216
Target Start/End: Complemental strand, 28787301 - 28787099
Alignment:
Q  14 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 113  Q
    |||||||||||||||||||| ||| |||||||||| |||||||||||||||| |||||||| ||||||||| | ||| | |||| |||||||||   |||    
T  28787301 agaatatatagttggtgacacgagatcatattttgttacgcccagttaatgatcgaacgcatctctgataccactgttgaaaaaatatagtgta---gga 28787205  T
Q  114 gctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgata---tggtgaagcctttaa 210  Q
    |||| ||||||||| ||||||||||| | || ||||||| ||||||||  || | |  ||| ||||||| || |||||||||   |||||||||||| ||    
T  28787204 gctaatggtagagtggttagtagcattgaacaagaggacacacattagtaattacctcattataggaggagataatatgatatggtggtgaagccttcaa 28787105  T
Q  211 tattat 216  Q
    ||||||    
T  28787104 tattat 28787099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 222
Target Start/End: Complemental strand, 24853629 - 24853431
Alignment:
Q  21 atagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttggagctagtg 120  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||||| ||||| ||  |||||||| | |||   |||| ||||||||||   |||||||||    
T  24853629 atagttggtgacatgaggttatattttgcgacgcctagttaatgatcgaacacaaatctgataccaatgttagaaaaatatagtgtag---gagctagtg 24853533  T
Q  121 gtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgac 220  Q
    || ||||  |||||||||| |||| ||||||| || ||| |  || |||  |||||||||||  ||||||||||||| ||||||||| ||||||||||||    
T  24853532 gtggagtgtttagtagcattggacaagaggacacatattggtaattagctcattgtaggaggaaagaatatgatatgatgaagccttcaatattattgac 24853433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 6824842 - 6824910
Alignment:
Q  14 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgat 82  Q
    ||||||||||||||||||||  ||||||||||||||||||||| ||||||||| ||||||||| |||||    
T  6824842 agaatatatagttggtgacacaaggtcatattttgctacgccctgttaatgactgaacgcagccctgat 6824910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 51246818 - 51246707
Alignment:
Q  111 ggagctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaa 210  Q
    |||||||||| | ||||  ||||||| || |||| ||||||| ||||||||  || |||  ||||||||||| ||||||||||| |||||||||||| ||    
T  51246818 ggagctagtgctggagtgtttagtagtatgggacaagaggacacacattaggaattagctcattgtaggaggagagaatatgatttggtgaagccttcaa 51246719  T
Q  211 tattattgacat 222  Q
    ||||||||||||    
T  51246718 tattattgacat 51246707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 17525452 - 17525501
Alignment:
Q  172 attgtaggaggtgagaatatgatatggtgaagcctttaatattattgaca 221  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  17525452 attgtaggaggagagaatatgatatggtgaagccttcaatattattgaca 17525501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 112 - 222
Target Start/End: Complemental strand, 24856432 - 24856322
Alignment:
Q  112 gagctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaat 211  Q
    ||||||||||| ||||  |||||||||| |||| ||| ||| || ||| |  || |||  ||||||||||| ||||||||||||||||||| | || |||    
T  24856432 gagctagtggtggagtgtttagtagcattggacaagatgacacatattggtaattagctcattgtaggaggagagaatatgatatggtgaaactttcaat 24856333  T
Q  212 attattgacat 222  Q
    |||||||||||    
T  24856332 attattgacat 24856322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 20978765 - 20978846
Alignment:
Q  141 ggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattgacat 222  Q
    |||| ||||||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  20978765 ggacaagaggacacacattagtgataagcatattgtaggaggagagaatatgatatggtgaagccttcaatattattgacat 20978846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 212
Target Start/End: Original strand, 22056355 - 22056550
Alignment:
Q  14 agaatatatagttggtgacaagaggtcatattttgctacgcccagttaatgaccgaacgcagctctgatactattgtagtaaaattatagtgtagttgga 113  Q
    ||||||||||||||||||||   |||  |||||||||| | ||| | |||| | ||||| ||||||||||| ||||| | |||| |||||||||   |||    
T  22056355 agaatatatagttggtgacacatggttgtattttgctatgtccactgaatggcggaacgaagctctgataccattgttggaaaaatatagtgta---gga 22056451  T
Q  114 gctagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaata 212  Q
    || | ||||||| ||||||||||||| |||| ||||||| || ||| |  || | |  |||||| |||| |||||||| ||||||||||||||| ||||    
T  22056452 gccaatggtagatttgttagtagcattggacaagaggacacatatttgtaattaactcattgtatgaggagagaatataatatggtgaagccttcaata 22056550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 6468 - 6365
Alignment:
Q  119 tggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatattattg 218  Q
    ||||||||| ||||||||||| |||| ||| ||| ||||||||  || |||  ||| ||||||| || |||||||| | |||||||||| ||||||||||    
T  6468 tggtagagtggttagtagcattggacaagatgacacacattaggaattagctcattataggaggagataatatgattttgtgaagccttcaatattattg 6369  T
Q  219 acat 222  Q
    ||||    
T  6368 acat 6365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 116 - 223
Target Start/End: Original strand, 22622282 - 22622389
Alignment:
Q  116 tagtggtagagttgttagtagcatcggaccagaggacgcacattagcgatgagcatattgtaggaggtgagaatatgatatggtgaagcctttaatatta 215  Q
    |||||||||||||||||||||||| |||| ||||||| || |||    || |||  ||| |||||||  ||||||||| ||||| | ||||  |||||||    
T  22622282 tagtggtagagttgttagtagcattggacaagaggacacatattgtaaattagctcattctaggaggaaagaatatgaaatggtaatgcctacaatatta 22622381  T
Q  216 ttgacatg 223  Q
    ||||||||    
T  22622382 ttgacatg 22622389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 217
Target Start/End: Complemental strand, 12738334 - 12738289
Alignment:
Q  172 attgtaggaggtgagaatatgatatggtgaagcctttaatattatt 217  Q
    ||||||||||  ||||||||||| |||||||||||| |||||||||    
T  12738334 attgtaggagaagagaatatgatttggtgaagccttcaatattatt 12738289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University