View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_high_15 (Length: 241)
Name: NF20213_high_15
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 233
Target Start/End: Complemental strand, 1818844 - 1818619
Alignment:
| Q |
8 |
gagcagagaaaaagcaagcctacttcaaacatgttataactgcttttggaagcaccagtcatgaacattgatgcaatagaaatcacagatggaactttaa |
107 |
Q |
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| T |
1818844 |
gagcacagaaaaagcaagcctacttcaaacatgttataactgcttttggaagcaccagtcatgaacattgatgcaatagaaatcacagatggaactttaa |
1818745 |
T |
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| Q |
108 |
attaagatcttatggattaaaaaacttttaactaagcctaatagttttcaaatttcatgattagatcccttcaaactaacacggtgaaatattccgtaaa |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
1818744 |
attaagatcttatggattaaaaaacttttaactaagcctaacagttttcaaatttcatgattagatctcttcaaactaacacggtgaaatattccgtaaa |
1818645 |
T |
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| Q |
208 |
acattgcttatgtggcatgatgatgt |
233 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1818644 |
acattgcttatgtggcatgatgatgt |
1818619 |
T |
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