View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20213_high_2 (Length: 559)
Name: NF20213_high_2
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 543
Target Start/End: Complemental strand, 1817460 - 1816934
Alignment:
| Q |
16 |
atggaaagagctaaccaataaaacaaaatccttgacacaaattaatcacgggtcacctcacatgtagatattcattaattttcatcgctgccttgtcagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1817460 |
atggaaagagctaaccaataaaacaaaatccttgacacaaattaatcacgggtcacctcacatgtagatattcattaattttcatcgctgccttgtcagc |
1817361 |
T |
|
| Q |
116 |
ctcctcaacaaactccctgatttatcagataagaaagaaaaacaacaagttataagnnnnnnnnnnaaagatcaaaaacaagttataagttaatcactac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1817360 |
ctcctcaacaaactccctgatttatcagataagaaagaaaaacaacaagttataagttttttttc-aaagatcaaaaacaagttataagttaatcactac |
1817262 |
T |
|
| Q |
216 |
acaagaaaacacaaacataaataaattaacaagaagcaagaagagttgtttcgcctattagaaattaaaagtatcctttagtcctctaaaatcgcaaatg |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1817261 |
acaagaaaacacaaacataaataaattaacaagaagcaagaagagttgtttcgcctattagaaattaaaagtatcctttagtcctctaaaatcacaaatg |
1817162 |
T |
|
| Q |
316 |
acagtcaaaatactctctgaccgggactaaaataaccctaaaaatcatcctaaaatgattgatttgatcaacaaatgagattttggatgacaaaattaac |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1817161 |
acagtcaaaatactctctgaccgggactaaaataaccctaaaaatcatcctaaaatgattgatttgatcaacaaatgagattttggatgacaaaattaac |
1817062 |
T |
|
| Q |
416 |
acttttatttctgcagaccaagtaggtctgcgttttttctcaaaaattagtttaggtctttactctaaagaagatttaaataaattataataacaaattg |
515 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |
|
|
| T |
1817061 |
acttttatttctgaagaccaagtaggtctgcgttttttctcaaaaattagtttaggtctttactctgaagaagatttaaataaattataatatcaaattg |
1816962 |
T |
|
| Q |
516 |
cagaaaaggacctgtttggatgggtttg |
543 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1816961 |
cagaaaaggacctgtttggatgggtttg |
1816934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University