View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20213_high_3 (Length: 454)
Name: NF20213_high_3
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 46319158 - 46318741
Alignment:
| Q |
18 |
accaaacacagtaacatacatgaagttggggagcgggtgcaaactcgcagcaaaattagtttttatttttattagaccaatattttcaagatgcggtaca |
117 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
46319158 |
accaaacacagtaacatacatgaagatggggagcgggtgcaaactcgcagcaaaattagtttttatttttattagaccaatattttcaagacgcggtaca |
46319059 |
T |
|
| Q |
118 |
tttatagaggtgtatatcataagttgatgaatctttttatgtatgaatgtgcatgcagaaaaacttcgagcaattagctcaaatttacgaacaaaacaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46319058 |
tttatagaggtgtatatcataagttgatgaatctttttatgtatgaatgtgcatgcagaaaaacttcgagcaattagctcaaatttacgaacaaaacaat |
46318959 |
T |
|
| Q |
218 |
gatgtagattaaatcaagtatcccacatagggtagatatttcagtcacgttagaactttgaacaacacgaagaatacaaacaatttaaacaagccagtgt |
317 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46318958 |
gatgtagatgaaatcaagtatcccacatagggtagatatttcagtcacgttagaactttgaacaacacgaagaatacaaacaatttaaacaagccagtgt |
46318859 |
T |
|
| Q |
318 |
ggtaggcaatgtacgnnnnnnnngtgacctacctcttttaggctgtgcttgtgccgcttatggcgatgacttttacttcgctccttttccttattctagc |
417 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46318858 |
ggtaggcaatgtacg-aaaaaaagtgacctacctcttttaggctgtgcttgtgccgcttatggcgatgacttttacttcgctccttttccttattctagc |
46318760 |
T |
|
| Q |
418 |
aaagaaagaaagatataag |
436 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
46318759 |
aaagaaagaaagatgtaag |
46318741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 341 - 401
Target Start/End: Complemental strand, 46324846 - 46324786
Alignment:
| Q |
341 |
gtgacctacctcttttaggctgtgcttgtgccgcttatggcgatgacttttacttcgctcc |
401 |
Q |
| |
|
||||||| ||||||||| ||| ||| | |||||||||||| ||||||||||||||||||| |
|
|
| T |
46324846 |
gtgacctgcctcttttaagctatgcctctgccgcttatggtcatgacttttacttcgctcc |
46324786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University