View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_high_6 (Length: 346)
Name: NF20213_high_6
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 41656377 - 41656036
Alignment:
| Q |
1 |
ttgaggaattaattgatacgtctcatttacggcacccggggtattggtcaggtatttggaggttaaaggttccgccaaaggttagaaatttaatttggca |
100 |
Q |
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| T |
41656377 |
ttgaggaattaattgatacgtctcatttacggcacccggggtattggtcaggtatttggaggttaaaggttccgccaaaggttagaaatttaatttggca |
41656278 |
T |
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| Q |
101 |
agtatgtagaggagttctgtggactcgtatacgactgcttgataaaggagtgcaatgcccaactaattgtgtcagctgcgactccgccaatgaagattta |
200 |
Q |
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| T |
41656277 |
agtatgtagaggagttctgtggactcgtatacgactgcttgataaaggagtgcaatgcccaactaattgtgtcagctgcgactccgccaatgaagattta |
41656178 |
T |
|
| Q |
201 |
tcgcacctttgcttccattgtacattcgcagttcaggtttggagcatgacatgcttatggcacgcgattcagtctgcaaccagccaagagaatatggttg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41656177 |
tcgcacctttgcttccattgtacattcgcagttcaggtttggagcatgacatgcttatggcacgcgattcagtctgcaaccagccaagagaatatggttg |
41656078 |
T |
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| Q |
301 |
ctgaagcagttttccatctcctgcgtacgctctgtgctgctc |
342 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| |
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| T |
41656077 |
ctgaagcagttttccatctcctgcgtacgctcagtgctgctc |
41656036 |
T |
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