View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_low_11 (Length: 281)
Name: NF20213_low_11
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 271
Target Start/End: Original strand, 41963169 - 41963423
Alignment:
| Q |
17 |
aacttcttcattagagaactcttcacttcttcaagttagttagtcaaatgatcattccacattgtaagaacaccagcagcatttgaagcatctgcacccg |
116 |
Q |
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| T |
41963169 |
aacttcttcaatagagaactcttcacttcttcaagttagttagtcaaatgatcattccacattgtaagaacaccagcagcatttgaagcatctgcacccg |
41963268 |
T |
|
| Q |
117 |
accaacttccataatctcctgaaggcatttcataatcaaccttaacatatgcaacttcctccgctgcatgcccaccaacaacattgttattcgcacaatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963269 |
accaacttccataatctcctgaaggcatttcataatcaaccttaacatatgcaacttcctccgctgcatgcccaccaacaacattgttattcgcacaatt |
41963368 |
T |
|
| Q |
217 |
catattcccaatataccctccaccaccattattctctatcatacccatgttcatc |
271 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41963369 |
catattcccaatataccctccaccaccattattctctatcatacccatgttcatc |
41963423 |
T |
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