View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_low_12 (Length: 262)
Name: NF20213_low_12
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_low_12 |
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| [»] scaffold0440 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 8090 - 8327
Alignment:
| Q |
16 |
attttaacagaacataaccaactgtacgtgatattgacttccaggaaagtatcaacttaacctcataaataatgcatttcatcaatgtg--tgtgtatct |
113 |
Q |
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| T |
8090 |
attttaacagaacataaccaactgtacgtgatattgacttccaggaaagtatcaacttaacctcataaataatgcattccatcaatgtgtgtgtgtatct |
8189 |
T |
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| Q |
114 |
gtatatttatatggtggttgtgtagcttatctaaattattatttgtattggatttgaacctatattaagttagaaagaacaggtttaaagttgaaacact |
213 |
Q |
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| T |
8190 |
gtatatttatatggtggttgtgtagcttatctaaattattatttgtattggatttgaacctatattaagttagaaagaacaggtttaaagttgaaacact |
8289 |
T |
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| Q |
214 |
tacatatggtgaattcaaataataactggctacagacc |
251 |
Q |
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| T |
8290 |
tacatatggtgaattcaaataataactggctacagacc |
8327 |
T |
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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 63520 - 63484
Alignment:
| Q |
159 |
tattggatttgaacctatattaagttagaaagaacag |
195 |
Q |
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| T |
63520 |
tattggatttgaacctatatctagttagaaagaacag |
63484 |
T |
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