View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20213_low_14 (Length: 254)

Name: NF20213_low_14
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20213_low_14
NF20213_low_14
[»] chr3 (3 HSPs)
chr3 (10-254)||(25522779-25523023)
chr3 (34-212)||(49773565-49773743)
chr3 (52-211)||(12717006-12717165)
[»] chr5 (1 HSPs)
chr5 (10-217)||(29777387-29777594)
[»] chr7 (13 HSPs)
chr7 (55-212)||(39537613-39537770)
chr7 (55-212)||(39547078-39547235)
chr7 (55-212)||(1084415-1084572)
chr7 (152-217)||(21902029-21902094)
chr7 (55-212)||(39339086-39339243)
chr7 (43-211)||(42153550-42153718)
chr7 (25-212)||(39563709-39563896)
chr7 (52-211)||(42132579-42132738)
chr7 (52-211)||(42171388-42171547)
chr7 (55-212)||(39353929-39354086)
chr7 (148-212)||(39366602-39366666)
chr7 (43-211)||(42141748-42141916)
chr7 (147-212)||(39621658-39621723)
[»] chr2 (3 HSPs)
chr2 (19-212)||(44233575-44233768)
chr2 (19-212)||(44222753-44222946)
chr2 (61-212)||(44210553-44210704)
[»] chr8 (1 HSPs)
chr8 (16-212)||(4501667-4501863)
[»] chr4 (5 HSPs)
chr4 (61-212)||(2887433-2887584)
chr4 (61-212)||(2896770-2896921)
chr4 (25-212)||(46452195-46452382)
chr4 (61-212)||(2877910-2878061)
chr4 (160-212)||(51049755-51049807)
[»] chr1 (2 HSPs)
chr1 (34-212)||(2148395-2148573)
chr1 (55-212)||(41687151-41687308)


Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 10 - 254
Target Start/End: Complemental strand, 25523023 - 25522779
Alignment:
Q  10 gagcagagaaagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctg 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25523023 gagcagagaaagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctg 25522924  T
Q  110 ccattgttatgagaactgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatga 209  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25522923 ccattgttatgagaactgttcgcaatactgttgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatga 25522824  T
Q  210 ggttagttgtttaagcaaggtgctactttctaaccaatttaatat 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25522823 ggttagttgtttaagcaaggtgctactttctaaccaatttaatat 25522779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 212
Target Start/End: Original strand, 49773565 - 49773743
Alignment:
Q  34 gcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgca 133  Q
    ||||| |||||||| || || || ||||| || |||||||||||||||||||| || ||||||||| | || ||||| || || |||||||| ||  | |    
T  49773565 gcagttgaacttgttgccaatccatctattatattcatggatgaacctacctctggccttgatgcaagagctgctgctatagtaatgagaacagtgagga 49773664  T
Q  134 atactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    |||| || || || || |||||||| || || || || |||||||| ||||||||||||||||| || |||||||||||    
T  49773665 atacagtggacacagggagaactgttgtctgcacaattcatcagcctagtattgatatatttgatgcttttgatgaggt 49773743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 12717165 - 12717006
Alignment:
Q  52 aacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaa 151  Q
    |||||||| || ||||||||||||||||| || || || ||||||||  | |||||||| ||||| ||| |||||||  | || || || || || || |    
T  12717165 aacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagagccgctgctattgtgatgtgaactgtgagaaacacagtagacacaggga 12717066  T
Q  152 gaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgagg 211  Q
    ||||||| || || || || || || ||||| |||||||| ||| |||| ||||||||||    
T  12717065 gaactgttgtgtgcacaattcaccaaccaagcattgatattttttaagcttttgatgagg 12717006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 217
Target Start/End: Original strand, 29777387 - 29777594
Alignment:
Q  10 gagcagagaaagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctg 109  Q
    |||||||| |||||||| ||||| |||||||| ||||||||||||||||| || || || ||||| || ||||| || ||||||||||| |||||||| |    
T  29777387 gagcagaggaagagattaacaattgcagtggagcttgtagcaaacccttccattatttttatggacgagcctacatctggacttgatgctcgtgccgcag 29777486  T
Q  110 ccattgttatgagaactgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatga 209  Q
    | || |||||| ||||||||||||| ||||| ||||||||||||||||| || |||||||||||||| |||||||||||||| |||||||||||||||||    
T  29777487 ctatcgttatgcgaactgttcgcaacactgttgatactggaagaactgttgtctgtaccatacatcaaccaagtattgatatttttgaagcatttgatga 29777586  T
Q  210 ggttagtt 217  Q
     |||||||    
T  29777587 agttagtt 29777594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 39537770 - 39537613
Alignment:
Q  55 ccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaa 154  Q
    ||||||||||| ||||||||||| || || || |||||||||||| | || || || |||||||||||||| ||| | || || || || ||||||||||    
T  39537770 ccttctataatattcatggatgagccaacttctggacttgatgcaagggctgcagctattgttatgagaacagttaggaacacagtagacactggaagaa 39537671  T
Q  155 ctgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | || ||||||||||| || || || || ||||||||||||||| | |||||||||||    
T  39537670 cagttgtttgtaccattcaccaacctagcattgatatatttgaatcttttgatgaggt 39537613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 39547235 - 39547078
Alignment:
Q  55 ccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaa 154  Q
    ||||||||||| ||||||||||| || || || |||||||||||| | || || || |||||||||||||| ||| | || || || || || |||||||    
T  39547235 ccttctataatattcatggatgagccaacttctggacttgatgcaagagctgcagctattgttatgagaacagttaggaacacagtagacaccggaagaa 39547136  T
Q  155 ctgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | || ||||||||||| || ||||| || ||||||||||||||| | |||||||||||    
T  39547135 cagttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt 39547078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 1084572 - 1084415
Alignment:
Q  55 ccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaa 154  Q
    ||||||||||| || |||||||| || || || || || ||||||   || || || |||||||||||||| ||| | |  || || || ||||||||||    
T  1084572 ccttctataatatttatggatgagccaacttctgggctagatgcaatggcagcagcgattgttatgagaacagttaggagcacagtagacactggaagaa 1084473  T
Q  155 ctgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    |||| ||||| ||||| ||||| ||||||||||||||||||||| | |||||||||||    
T  1084472 ctgttgtttgcaccatccatcaaccaagtattgatatatttgaatcttttgatgaggt 1084415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 21902029 - 21902094
Alignment:
Q  152 gaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggttagtt 217  Q
    |||||||||||| ||||||| |||| |||||||||||||| ||||||||||||||||| |||||||    
T  21902029 gaactgtggtttttaccatatatcaaccaagtattgatatttttgaagcatttgatgaagttagtt 21902094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 39339086 - 39339243
Alignment:
Q  55 ccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaa 154  Q
    ||||| ||||| ||||||||||| || || || || || |||||| | || || || |||||||||||||| ||| | || || || || ||||||||||    
T  39339086 ccttcaataatattcatggatgagccaacttctgggctagatgcaagggctgcagctattgttatgagaacagttaggaacacagtagacactggaagaa 39339185  T
Q  155 ctgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | || |||||||| || || ||||| || ||||||||||||||| | |||||||||||    
T  39339186 cagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggt 39339243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 42153718 - 42153550
Alignment:
Q  43 cttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcg 142  Q
    ||||| || |||||||| || ||||||||||||||||| || || || || |||||  | |||||||| || |||||| |||| ||  | ||||| || |    
T  42153718 cttgttgccaacccttcaatcatcttcatggatgaaccaacatcaggcctcgatgctagagccgctgcaatcgttatgcgaaccgtgagaaatacagtag 42153619  T
Q  143 atactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgagg 211  Q
    |||| || |||||||| ||||| || || ||||| |||||||| || || |||||||| ||||||||||    
T  42153618 atacagggagaactgttgtttgcacaattcatcaaccaagtatagacatttttgaagcttttgatgagg 42153550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 212
Target Start/End: Complemental strand, 39563896 - 39563709
Alignment:
Q  25 ttgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaa 124  Q
    |||||||| ||||| ||  | ||||| || ||||| ||||| |||||||||||||| || || || || |||||| | || || || ||||| |||||||    
T  39563896 ttgacaattgcagttgagttggtagctaatccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagctattgtgatgagaa 39563797  T
Q  125 ctgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | ||| | || || ||  | ||||||||||| || |||||||| || || ||||| || ||||||||||||||| | |||||||||||    
T  39563796 cagttaggaacacagtaaacactggaagaacagttgtttgtactatccaccagcctagcattgatatatttgaatcttttgatgaggt 39563709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 42132738 - 42132579
Alignment:
Q  52 aacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaa 151  Q
    |||||||| || ||||||||||||||||| || || || ||||||||  | |||||||||||||| ||| |||||||  | || || || || || || |    
T  42132738 aacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagagccgctgccattgtgatgcgaactgtgagaaacacagtagacacaggga 42132639  T
Q  152 gaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgagg 211  Q
    ||||||| || || || || || || ||||| |||||||| |||||||| ||||||||||    
T  42132638 gaactgttgtgtgcacaattcaccaaccaagcattgatatttttgaagcttttgatgagg 42132579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 52 - 211
Target Start/End: Complemental strand, 42171547 - 42171388
Alignment:
Q  52 aacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaa 151  Q
    |||||||| || ||||||||||||||||| || || || ||||||||  | |||||||| ||||||||| | || ||  | ||||| || ||||| || |    
T  42171547 aacccttcaatcatcttcatggatgaaccaacatcaggccttgatgctagagccgctgctattgttatgcggaccgtgagaaatacagtagatacaggga 42171448  T
Q  152 gaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgagg 211  Q
    ||||||| ||||| || || ||||| ||||| |  ||||| |||||||| ||||||||||    
T  42171447 gaactgttgtttgcacaattcatcaaccaagcacggatatttttgaagcttttgatgagg 42171388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 212
Target Start/End: Original strand, 39353929 - 39354086
Alignment:
Q  55 ccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaa 154  Q
    ||||| ||||| |||||||||||||| || || || || |||||| | || || ||  |||| |||||||| ||| | || || || ||||| |||||||    
T  39353929 ccttcaataatattcatggatgaaccaacttctgggctagatgcaagggctgcagcagttgtgatgagaacagttagaaacacagtagatacaggaagaa 39354028  T
Q  155 ctgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | || |||||||| || || ||||| || ||||||||||||||| | |||||||||||    
T  39354029 cagttgtttgtacaatccaccagcctagcattgatatatttgaatcttttgatgaggt 39354086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 39366602 - 39366666
Alignment:
Q  148 ggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    ||||||||||| ||||||||||| || ||||| || ||||||||||||||| | |||||||||||    
T  39366602 ggaagaactgttgtttgtaccatccaccagcctagcattgatatatttgaatcttttgatgaggt 39366666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 211
Target Start/End: Complemental strand, 42141916 - 42141748
Alignment:
Q  43 cttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcg 142  Q
    ||||| || |||||||| || ||||||||||||||||| || || || || |||||  | |||||||| || |||||| | || ||  | ||||| || |    
T  42141916 cttgttgccaacccttcaatcatcttcatggatgaaccaacatcaggcctcgatgctagagccgctgcaatcgttatgcggaccgtgagaaatacagtgg 42141817  T
Q  143 atactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgagg 211  Q
    |||| || |||||||| ||||| || || ||||| |||||||| || || |||||||| ||||||||||    
T  42141816 atacagggagaactgttgtttgcacaattcatcaaccaagtatagacatttttgaagcttttgatgagg 42141748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 39621723 - 39621658
Alignment:
Q  147 tggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    |||||||||||| || ||| |||| |||||  ||| |||||||||||||||| | |||||||||||    
T  39621723 tggaagaactgttgtctgtgccattcatcaatcaaatattgatatatttgaatcttttgatgaggt 39621658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 44233768 - 44233575
Alignment:
Q  19 aagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgtta 118  Q
    |||||| |||| || ||||| |||||||| || || || |||||||| || |||||||| ||||| || ||  | |||||  | || ||||| |||||||    
T  44233768 aagagactgactattgcagttgaacttgtggctaatccatctataatttttatggatgagcctacttctggtttagatgctagagctgctgcaattgtta 44233669  T
Q  119 tgagaactgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    ||||||||||  | || || || || || |||||||| || || |||||||| |||||||| || ||||| |||||||||||||||||||||||    
T  44233668 tgagaactgtaaggaacacagtggacacaggaagaacagttgtgtgtaccatccatcagcctagcattgacatatttgaagcatttgatgaggt 44233575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 212
Target Start/End: Complemental strand, 44222946 - 44222753
Alignment:
Q  19 aagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgtta 118  Q
    |||||| |||| || ||||| |||||||| || || || |||||||| ||||||||||| ||||| || ||  | |||||  | || ||||| |||||||    
T  44222946 aagagactgactattgcagtcgaacttgtggctaatccatctataattttcatggatgagcctacttctggtttagatgctagagcggctgcaattgtta 44222847  T
Q  119 tgagaactgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    || |||||||  | || || || || || |||||||| || || |||||||| ||||| || || ||||| |||||||||||||||||||||||    
T  44222846 tgcgaactgtaaggaacacagtggacacgggaagaacagttgtgtgtaccatccatcaacctagcattgacatatttgaagcatttgatgaggt 44222753  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 44210704 - 44210553
Alignment:
Q  61 ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaactgtgg 160  Q
    ||||| |||||||||||||| || || ||  | |||||  | || ||||| |||||||||||||||||  | || || || || || |||||||| || |    
T  44210704 ataattttcatggatgaaccaacttctggtttagatgctagagctgctgcaattgttatgagaactgtaaggaacacagtggacacaggaagaacagttg 44210605  T
Q  161 tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | |||||||| ||||| || || ||||| |||||||||||||||||||||||    
T  44210604 tgtgtaccatccatcaacctagcattgacatatttgaagcatttgatgaggt 44210553  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 4501667 - 4501863
Alignment:
Q  16 agaaagagattgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattg 115  Q
    ||||||||  ||||||| || || || ||||| || || ||||| || || ||||||||||| || || || || || |||||| | || ||||| ||||    
T  4501667 agaaagaggctgacaattgcggtcgagcttgttgctaatccttcaatcatattcatggatgagccaacttctggtctagatgcaagagcagctgctattg 4501766  T
Q  116 ttatgagaactgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    ||||||| |||||  | || ||||| |||||||||||||| || || || || || ||||| || || |||||||| |||||||| |||||||||||    
T  4501767 ttatgaggactgtaagaaacactgttgatactggaagaacagttgtgtgcacaattcatcaacctagcattgatatctttgaagcctttgatgaggt 4501863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 2887433 - 2887584
Alignment:
Q  61 ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaactgtgg 160  Q
    ||||| ||||||||||| ||||| || ||| | |||||  | || ||||| ||||||||| |||| ||| | || || || || || |||||||| || |    
T  2887433 ataattttcatggatgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttg 2887532  T
Q  161 tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    |||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||    
T  2887533 tttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt 2887584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 212
Target Start/End: Complemental strand, 2896921 - 2896770
Alignment:
Q  61 ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaactgtgg 160  Q
    ||||| ||||||||||| ||||| || ||| | |||||  | || ||||| ||||||||| |||| ||| | || || || || || |||||||| || |    
T  2896921 ataattttcatggatgagcctacatctggattagatgctagagctgctgcaattgttatgcgaacagttaggaacacggttgacacaggaagaacagttg 2896822  T
Q  161 tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    |||| ||||| ||||| ||||||||||| ||||| ||||| |||||||||||    
T  2896821 tttgcaccattcatcaaccaagtattgacatattcgaagcttttgatgaggt 2896770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 46452195 - 46452382
Alignment:
Q  25 ttgacaatagcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaa 124  Q
    ||||| |||||||||||||| || || |||||||||||  ||||||||||||| || || |||||| | |||||  | || || |||||||| |||||||    
T  46452195 ttgactatagcagtggaactagttgccaacccttctatggtcttcatggatgagcccacgtccggattggatgctagggctgcagccattgtgatgagaa 46452294  T
Q  125 ctgttcgcaatactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    ||||  | |||| |||  |||||||  ||||  | || || ||||| |||||||| || || || ||||||||| | |||||||||||    
T  46452295 ctgtgaggaatattgtaaatactgggcgaacgattgtctgcaccatccatcagcctagcatagacatatttgaatcctttgatgaggt 46452382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 212
Target Start/End: Original strand, 2877910 - 2878061
Alignment:
Q  61 ataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaactgtgg 160  Q
    ||||| |||||||| || ||||| || ||| | |||||  | || ||||| ||||||||| |||| ||| | || || || || || |||||||| || |    
T  2877910 ataattttcatggacgagcctacatctggattagatgctagagctgctgcaattgttatgcgaaccgttaggaacacggttgacacaggaagaacagttg 2878009  T
Q  161 tttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    |||||||||| ||||| |||||||| || ||||||||| | |||||||||||    
T  2878010 tttgtaccattcatcaaccaagtatcgacatatttgaatcttttgatgaggt 2878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 51049755 - 51049807
Alignment:
Q  160 gtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    ||||| ||||||||||| |||||||| |||||||||||  | |||||||||||    
T  51049755 gtttgcaccatacatcaaccaagtatcgatatatttgagacttttgatgaggt 51049807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 2148573 - 2148395
Alignment:
Q  34 gcagtggaacttgtagcaaacccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgca 133  Q
    ||||| ||||||||||| || || || ||||| |||||||||||||| ||||| || || ||||| || || ||||| ||||| ||| |||| ||  | |    
T  2148573 gcagttgaacttgtagcgaatccatcgataatattcatggatgaaccaacctctggcctggatgctcgagcagctgcgattgtaatgcgaacagtaagga 2148474  T
Q  134 atactgtcgatactggaagaactgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    | ||||| || || ||| | || ||||| || || || |||||||| |||||||| ||||||||  | |||||||||||    
T  2148473 acactgtggacacaggacgtaccgtggtgtgcacgatccatcagccgagtattgacatatttgattcctttgatgaggt 2148395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 212
Target Start/End: Complemental strand, 41687308 - 41687151
Alignment:
Q  55 ccttctataatcttcatggatgaacctacctccggacttgatgcacgtgccgctgccattgttatgagaactgttcgcaatactgtcgatactggaagaa 154  Q
    ||||| || ||||| |||||||| ||||| || || ||||||||  | || || || ||||||||| | |||||  | ||||| |  ||||| || ||||    
T  41687308 ccttcaatcatctttatggatgagcctacatcaggccttgatgccagagctgcagcaattgttatgcgtactgtcagaaatacagcggatacagggagaa 41687209  T
Q  155 ctgtggtttgtaccatacatcagccaagtattgatatatttgaagcatttgatgaggt 212  Q
    ||||||| || || || || || ||||| ||||||||||||||| | |||||||||||    
T  41687208 ctgtggtctgcacaattcaccaaccaagcattgatatatttgaatcttttgatgaggt 41687151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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