View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20213_low_15 (Length: 251)

Name: NF20213_low_15
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20213_low_15
NF20213_low_15
[»] chr3 (1 HSPs)
chr3 (14-232)||(8523058-8523276)
[»] chr5 (9 HSPs)
chr5 (14-232)||(42128835-42129053)
chr5 (33-232)||(42117714-42117913)
chr5 (15-221)||(34240469-34240675)
chr5 (14-210)||(34232725-34232924)
chr5 (14-221)||(42123461-42123668)
chr5 (142-223)||(41713612-41713693)
chr5 (112-187)||(41572040-41572115)
chr5 (112-187)||(41617679-41617754)
chr5 (24-89)||(41444445-41444510)
[»] chr2 (3 HSPs)
chr2 (14-228)||(12248416-12248630)
chr2 (14-228)||(11994299-11994513)
chr2 (18-221)||(32681840-32682043)
[»] chr4 (1 HSPs)
chr4 (14-221)||(11118106-11118313)
[»] chr6 (2 HSPs)
chr6 (14-221)||(25522954-25523161)
chr6 (14-92)||(24140921-24140999)


Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 8523276 - 8523058
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    ||||||||||||||||||||||||| ||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8523276 agaagacaattttcctcattggcttgaaacactgcattatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagatc 8523177  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8523176 aagcatccatttccagatttaactatttttgatatctcaaacaataactttagtggtcctctaccaaaatcctatttcaaaaagtttgaagccatgatga 8523077  T
Q  214 atgttactgagttggaata 232  Q
    |||||||||||||||||||    
T  8523076 atgttactgagttggaata 8523058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 14 - 232
Target Start/End: Complemental strand, 42129053 - 42128835
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    |||||||||||||||| |||||||||||||  |||||||||||||||||||| |||||| |||||| ||||||||||||||||||| ||||| |||| ||    
T  42129053 agaagacaattttcctgattggcttcaaacactgcaatatttgaaagtgttggttttgcaagacaacaagttgcatggtatcattgctaatctaaagatc 42128954  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
    |||||||||||||||  ||||| |||||||||||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||| ||    
T  42128953 aagcatccatttccaagtttaattatttttgatatctcaggcaataactttagcggtccgctaccaaaagcctattttaaaaagtttgaagccatgaaga 42128854  T
Q  214 atgttactgagttggaata 232  Q
    |||||||| | ||||||||    
T  42128853 atgttactcaattggaata 42128835  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 33 - 232
Target Start/End: Complemental strand, 42117913 - 42117714
Alignment:
Q  33 tggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctcaagcatccatttccagatt 132  Q
    |||||||||||  | ||||||||| |||||||| |||| | |||||||||||||||||||||||||  |||||||||| |||||||||||||||||  ||    
T  42117913 tggcttcaaacactacaatatttgcaagtgttggttttacaagacaataagttgcatggtatcattcctaatccaaagatcaagcatccatttccaagtt 42117814  T
Q  133 taactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatgaatgttactgagttggaata 232  Q
    ||| ||||||| |||||||| | |||||||||||  |||| ||||||||||| | ||| ||||| ||||||||||||| ||| |||||||| ||||||||    
T  42117813 taattattttttatatctcaggaaataactttagctgtccgctaccaaaagcatttttaaaaaaatttgaagccatgaagaaagttactgaattggaata 42117714  T

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Target: chr5; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 34240469 - 34240675
Alignment:
Q  15 gaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctca 114  Q
    |||||||| ||||||   |||||||||||  | ||||| ||||||||| || ||||||||||||||||||||||||||  |||||  |||  |||| |||    
T  34240469 gaagacaaatttcctgtctggcttcaaactctccaatacttgaaagtgctggttttgcgagacaataagttgcatggtcacattgccaatttaaagatca 34240568  T
Q  115 agcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatgaa 214  Q
     ||||||||||||   ||||  ||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||| | ||||||||||||| |||    
T  34240569 ggcatccatttcctagtttagttatttttgatatctcaagcaataactttactggtccgctaccaaaagcctatttaaaatattttgaagccatgaagaa 34240668  T
Q  215 tgttact 221  Q
     ||||||    
T  34240669 agttact 34240675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 14 - 210
Target Start/End: Original strand, 34232725 - 34232924
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    ||||||||| |||||| | ||| ||||||| |||||| ||||||||||| |  |||| ||||| |||||||||||||||  |||||  |||  |||| ||    
T  34232725 agaagacaaatttcctgactggattcaaactttgcaagatttgaaagtgctagttttacgagataataagttgcatggtcacattgccaatttaaagatc 34232824  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctacca---aaagcctatttcaaaaagtttgaagccatga 210  Q
    ||| ||||||||||   ||||  |||||||||||||||  | ||||||||||||||||| ||||||   |||| |||||||||||||| |||||||||||    
T  34232825 aagaatccatttcccagtttagttatttttgatatctcgggaaataactttagtggtccgctaccaccgaaagactatttcaaaaagtatgaagccatga 34232924  T

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Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 42123668 - 42123461
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    |||||||||||||||| ||||| |||||||  | ||| ||||||||||  || ||||||||||||||||||| ||||||  ||| |  |||  |||| |     
T  42123668 agaagacaattttcctgattggtttcaaacacttcaagatttgaaagtactggttttgcgagacaataagtttcatggtcccatcgccaatttaaagatt 42123569  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
     ||| || |||||||   ||||  ||||||||||||||  | ||||||||| |||||  |||||||||||||||||  ||||| | ||||||||||| ||    
T  42123568 gagcgtctatttccaagcttaatcatttttgatatctctggaaataactttggtggttttctaccaaaagcctattcaaaaaattatgaagccatgaaga 42123469  T
Q  214 atgttact 221  Q
    ||| ||||    
T  42123468 atgatact 42123461  T

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Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 223
Target Start/End: Original strand, 41713612 - 41713693
Alignment:
Q  142 ttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatgaatgttactga 223  Q
    ||||||||||  ||||| |||| |||||||| ||||||||||||||||| ||||| | | || |||||| ||||||||||||    
T  41713612 ttgatatctcgggcaatgacttcagtggtccgctaccaaaagcctatttaaaaaattatcaaaccatgaagaatgttactga 41713693  T

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Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 41572040 - 41572115
Alignment:
Q  112 tcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagccta 187  Q
    ||||||||||||||||   ||||| |||||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  41572040 tcaagcatccatttcctagtttaattatttttgatatttcatccaataacttcagtggcccactaccaaaagccta 41572115  T

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Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 187
Target Start/End: Original strand, 41617679 - 41617754
Alignment:
Q  112 tcaagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagccta 187  Q
    ||||||||||||||||   ||||| |||||||||||| |||  ||||||||| ||||| || ||||||||||||||    
T  41617679 tcaagcatccatttcctagtttaattatttttgatatttcatccaataacttcagtggcccactaccaaaagccta 41617754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 41444510 - 41444445
Alignment:
Q  24 tttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcat 89  Q
    ||||| |||||||||||||| |||  | ||||||||||  || ||||||||| |||||||||||||    
T  41444510 tttccccattggcttcaaactttgtcacatttgaaagtactggttttgcgagccaataagttgcat 41444445  T

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Target: chr2 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 12248630 - 12248416
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    ||||||| | |||||| |||||||||||||  ||||| |||||||||| |||||  |||||||||||||||||||||||||||||||||||| |||        
T  12248630 agaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatggtatcattgttaatctaaataca 12248531  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
    |||||||||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||  |||||||||||||||||| ||    
T  12248530 aagcatccatttccaagtttaactatttttgatatctcaggcaataactttagtggtccgctaccaaatgcctattttgaaaagtttgaagccatgaaga 12248431  T
Q  214 atgttactgagttgg 228  Q
    ||||| |||| ||||    
T  12248430 atgttgctgaattgg 12248416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 228
Target Start/End: Original strand, 11994299 - 11994513
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    ||||||| | |||||| |||||||||||||  ||||| |||||||||| |||||  ||||||||||||||||||||| |||||||||||||| |||        
T  11994299 agaagacgagtttcctgattggcttcaaacactgcaagatttgaaagttttgctgctgcgagacaataagttgcatgatatcattgttaatctaaataca 11994398  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
    |||||||||||||||  |||||||||||||||||||| | ||||||||||||||||||| |||||||| ||||||||  |||||||||||||||||| ||    
T  11994399 aagcatccatttccaagtttaactatttttgatatctaaggcaataactttagtggtccgctaccaaatgcctattttgaaaagtttgaagccatgaaga 11994498  T
Q  214 atgttactgagttgg 228  Q
    ||||| |||| ||||    
T  11994499 atgttgctgaattgg 11994513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 221
Target Start/End: Original strand, 32681840 - 32682043
Alignment:
Q  18 gacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctcaagc 117  Q
    |||||||| ||  |||||||||| ||  ||||| |||||||||| ||| ||||||| ||||| ||||||||||||  |||||| |||  ||||  | | |    
T  32681840 gacaatttcccatattggcttcatacaatgcaagatttgaaagtattggttttgcgtgacaacaagttgcatggtcccattgtcaatttaaagaacgaac 32681939  T
Q  118 atccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatgaatgt 217  Q
    ||| ||||||    ||||  ||||||||||||||  | || ||||| ||||||  | || ||||||| ||||| ||    ||||||||||||| ||||||    
T  32681940 atctatttcctagcttaatcatttttgatatctctggaaacaacttcagtggttttatatcaaaagcttatttaaatttttttgaagccatgaagaatgt 32682039  T
Q  218 tact 221  Q
    ||||    
T  32682040 tact 32682043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 11118313 - 11118106
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    |||||||| ||||||| ||||||||||||| |||| | |||||||||| ||| ||||||||||||||||||||||||||  |||||  |||  |||| ||    
T  11118313 agaagacagttttcctgattggcttcaaacattgccagatttgaaagtattggttttgcgagacaataagttgcatggtcccattgaaaatttaaagatc 11118214  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
     |||||| |||||||   ||||  ||||||||||||||  |||| | ||||||||||  |||||||||||||||||| ||||| | |||||| |||| ||    
T  11118213 gagcatctatttccaagcttaatcatttttgatatctcgggcaacagctttagtggttttctaccaaaagcctatttaaaaaactatgaagctatgaaga 11118114  T
Q  214 atgttact 221  Q
    ||||||||    
T  11118113 atgttact 11118106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 221
Target Start/End: Original strand, 25522954 - 25523161
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggtatcattgttaatccaaagctc 113  Q
    |||||||||||||||  |||||||||||||  ||||  |||||||||||||| ||||||||||||| ||||||||||||  | |||| |||  |||  ||    
T  25522954 agaagacaattttccggattggcttcaaacaatgcaggatttgaaagtgttggttttgcgagacaacaagttgcatggttcccttgtcaatttaaaaatc 25523053  T
Q  114 aagcatccatttccagatttaactatttttgatatctcaagcaataactttagtggtcctctaccaaaagcctatttcaaaaagtttgaagccatgatga 213  Q
    |||||| |||||| |  |||||  ||||||||||||||| | || || ||  |||||  |||||||||||||||||| | ||| | ||||||||||| ||    
T  25523054 aagcattcatttcaaagtttaatcatttttgatatctcaggtaacaatttaggtggttttctaccaaaagcctatttaagaaattatgaagccatgaaga 25523153  T
Q  214 atgttact 221  Q
    ||||||||    
T  25523154 atgttact 25523161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 24140999 - 24140921
Alignment:
Q  14 agaagacaattttcctcattggcttcaaaccttgcaatatttgaaagtgttgcttttgcgagacaataagttgcatggt 92  Q
    ||||||||||||| || ||||||||| |||  ||||||||||| |||| ||| ||||||||||||||||||| ||||||    
T  24140999 agaagacaatttttctgattggcttctaacactgcaatatttggaagtattggttttgcgagacaataagttacatggt 24140921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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