View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_low_4 (Length: 407)
Name: NF20213_low_4
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 407
Target Start/End: Original strand, 25522312 - 25522697
Alignment:
| Q |
18 |
acgttccttagaaaagatatcttttattgtcattaggactcgtgagaatagataaagttacctgaattggtcggaattttcataaacatttgcaaagtct |
117 |
Q |
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| T |
25522312 |
acgttccttagaaaagacatcttttattgttattaggactcgtgagaatagataaagttacctgaattggtcagaattttcgtaaacatttgcaaagtct |
25522411 |
T |
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| Q |
118 |
acaccaagtttttcttcaatagcaagtgtggtaacctcgagcatccaagtagctggattgtagtcactaggaattggggagattccactgatactctgca |
217 |
Q |
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| T |
25522412 |
acaccgagtttttcttcaatagcaagtgtggtaacctcaagcatccaagttgctggattatagtcactgggaattggggagattccactgatactctgca |
25522511 |
T |
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| Q |
218 |
tnnnnnnnnntgttgatgtttttaacaaagaaaattagcttaaattccacgaacatcgtttctaccttaacattacgatccttacacaactagaaaatga |
317 |
Q |
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| T |
25522512 |
taaaaaaaa----tgatgtttttaacaaagaaaattagcttaaattccacaaacatcgtttctaccttaacattatgatccttacacaactagaaaatga |
25522607 |
T |
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| Q |
318 |
gaatgaattaagttatgcaagaaataattgnnnnnnnntgtcacctgaaaatattttatcatcacatctgattggttaccaatcttcccc |
407 |
Q |
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|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
25522608 |
gaatgaattaagttatacaagaaataattgaaagaaaatgtcacctgaaaatattttatcatcacatttgattggttaccaatcttcccc |
25522697 |
T |
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