View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_low_6 (Length: 364)
Name: NF20213_low_6
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 31768709 - 31769058
Alignment:
| Q |
1 |
aaaactccaaaaccagataaaacacatggttgttgtcgaatgatagcttacaaatagcattattgacttctgtcaaaccccctaatccattatactcaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768709 |
aaaactccaaaaccagataaaacacatggttgttgtcgaatgatagcttacaaatagcattattgacttctgtcaaaccccctaatccattatactcaat |
31768808 |
T |
|
| Q |
101 |
tataagtggtcactactgtccttctcttcaataccaatcgtgaggtgcactcaattatatatacattctcaaagttcatttgaacagggccagaccaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768809 |
tataagtggtcactactgtccttctcttcaataccaatcgtgaggtgcactcaattatatatacattctcaaagttcatttgaacagggccagaccaaag |
31768908 |
T |
|
| Q |
201 |
ctaatcgaggtcgggctacaacacatggctcnnnnnnntgtatttcggcccatcaccatatatagtggttaagtagttctaacgaaaagaaaatgaaaag |
300 |
Q |
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| |||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31768909 |
cccatcgaggtcgggctacaacacatggcccaaaaaaatgtatttcggcccatcatcatatatagtggttaagtagttctaacgaaaagaaaatgaaaag |
31769008 |
T |
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| Q |
301 |
aaactaaacttggtttagtggt----tccacactctgttcgggttcataa |
346 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31769009 |
aaactaaacttggtttagtggttccgtccacactctgttcgggttcataa |
31769058 |
T |
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