View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20213_low_9 (Length: 322)
Name: NF20213_low_9
Description: NF20213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20213_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 7 - 309
Target Start/End: Original strand, 22914143 - 22914445
Alignment:
| Q |
7 |
ctaaagaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagatcttgagttataattctattggtttgtctttttc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22914143 |
ctaaagaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagataatgagttataattctattggtttgtctttttc |
22914242 |
T |
|
| Q |
107 |
accttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22914243 |
accttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagag |
22914342 |
T |
|
| Q |
207 |
atgactaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaagagttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22914343 |
atgactaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaagagttg |
22914442 |
T |
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| Q |
307 |
cct |
309 |
Q |
| |
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||| |
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| T |
22914443 |
cct |
22914445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 7 - 301
Target Start/End: Complemental strand, 22933948 - 22933654
Alignment:
| Q |
7 |
ctaaagaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagatcttgagttataattctattggtttgtctttttc |
106 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
22933948 |
ctaaagaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagataatgagttataattctattggtttgtctttttc |
22933849 |
T |
|
| Q |
107 |
accttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagag |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22933848 |
accttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgagccgaagag |
22933749 |
T |
|
| Q |
207 |
atgactaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagtgaattcaagaatatttttaatcacttcaag |
301 |
Q |
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| T |
22933748 |
atgactaatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcaccaaagaagttttttcaagaatatttttaatcacttcaag |
22933654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 9 - 271
Target Start/End: Original strand, 22939552 - 22939814
Alignment:
| Q |
9 |
aaagaagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagatcttgagttataattctattggtttgtctttttcac |
108 |
Q |
| |
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||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||| ||||| ||| |
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| T |
22939552 |
aaagaagtgatgaaaaaccatgatcttgtctttgcatcaaggcctccaatccaagcttcaaagatcatgagttatgattctcttggtttagcttttgcac |
22939651 |
T |
|
| Q |
109 |
cttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagat |
208 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||| |||| || || ||||||||||||||||| |||||||||||||||||| |||| |||||| | |
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| T |
22939652 |
cttatggtgattattggagaaaccttagaaaaatttgtacacttgagctattaagttcaaaacgtgtccaatcttttcaaccaattagaagtgaagaggt |
22939751 |
T |
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| Q |
209 |
gactaatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcaccaaagaagt |
271 |
Q |
| |
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|||||||||||||| |||||| |||| || ||||||||| |||| ||| | ||||||||||| |
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| T |
22939752 |
aactaatctaatcaagtggatatcttctaaagaaggatcacaaatcaattttaccaaagaagt |
22939814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 100 - 182
Target Start/End: Complemental strand, 22947614 - 22947532
Alignment:
| Q |
100 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatct |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||| |||||||||||||||| |
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| T |
22947614 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagcataaaacgtgttcaatct |
22947532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 22987346 - 22987298
Alignment:
| Q |
100 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgc |
148 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
22987346 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
22987298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 178
Target Start/End: Complemental strand, 22973452 - 22973374
Alignment:
| Q |
100 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttca |
178 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||||| | | |||||||||||| |||||||||||| |
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| T |
22973452 |
ctttttcaccatatggtgattattggagacagcttagaaagatttgtaccgttgaacttttaagtataaaacgtgttca |
22973374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 23141421 - 23141381
Alignment:
| Q |
108 |
ccttatggtgattattggagacaacttagaaaaatttgtgc |
148 |
Q |
| |
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||||||||| ||||||||||||| || |||||||||||||| |
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| T |
23141421 |
ccttatggtaattattggagacagctaagaaaaatttgtgc |
23141381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 23611411 - 23611363
Alignment:
| Q |
100 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgc |
148 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
23611411 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
23611363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 14307524 - 14307476
Alignment:
| Q |
100 |
ctttttcaccttatggtgattattggagacaacttagaaaaatttgtgc |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14307524 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
14307476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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