View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_high_15 (Length: 312)
Name: NF20214_high_15
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 303
Target Start/End: Complemental strand, 45169798 - 45169510
Alignment:
| Q |
16 |
tcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagcgcatggctcaaa-gacatgtttctccttaagccctacgcttcatcca |
114 |
Q |
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| T |
45169798 |
tcagtattgccatgaatccggcttgcaccaagcagagctccctacgaagcagcgcctggctcaaaaggcatgtttctccttaagtcctgcgcttcttcca |
45169699 |
T |
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| Q |
115 |
agcggtcaactctgccaagaagatcaatcatgcaagtataacgttttgaagttgttgttacactgtatttttcattcattggatagaagtattcggctcc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45169698 |
agcggtcaactctgccaagaagatcaatcatgcaagtataatgttttgaagttggtgttacactgtattcttcattcattggatagaagtattcggctcc |
45169599 |
T |
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| Q |
215 |
tgtgtctagcaaaccagtatatatgacaacaagcagaaagaacagcaacccgaaacttttataggatatgaatgtgatataatgatgat |
303 |
Q |
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| T |
45169598 |
tgtgtctagcaaaccggtatatatgactacaagcagaaagaactgcaacctgaaacctatataggatatgaatataatataatgatgat |
45169510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 270
Target Start/End: Complemental strand, 45166972 - 45166721
Alignment:
| Q |
16 |
tcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagcgcatggctcaaa-gacatgtttctccttaagccctacgcttcatcca |
114 |
Q |
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| T |
45166972 |
tcagtattgccatgaatccggcttgcaccaagtagagctccccatgaagcagcaccaggctgaaaaggcatgtttcttattaagtcctgtgcttcttcca |
45166873 |
T |
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| Q |
115 |
agcggtcaactctgccaagaagatcaatcatgcaagtataacgttttgaagttgttgttacactgtatttttcattcattggatagaagtattcggctcc |
214 |
Q |
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| T |
45166872 |
atcggccagctctgccaagaagatcaatcatgcaagtataatgttttgaagttggtattacaccataatctttagtcattgaatagaagtattcagttcc |
45166773 |
T |
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| Q |
215 |
tgtgtctagcaaaccagtatatatgacaacaagcagaaagaacagcaacccgaaac |
270 |
Q |
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| T |
45166772 |
cctgtctagcaagccag----tatgactacaagcagaaagaacgccaacctgaaac |
45166721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 174
Target Start/End: Complemental strand, 45153790 - 45153646
Alignment:
| Q |
31 |
atccggcttgcaccaagcagagctccctatgacgcagcgcatggctcaaa-gacatgtttctccttaagccctacgcttcatccaagcggtcaactctgc |
129 |
Q |
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| T |
45153790 |
atccggcttgcacctaatagagctccccatgttgcagcatctggctcaaaaggcatgtttctcattaagttatgtgcttcttccaggaggccagctctac |
45153691 |
T |
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| Q |
130 |
caagaagatcaatcatgcaagtataacgttttgaagttgttgtta |
174 |
Q |
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| T |
45153690 |
caagaagatcaatcatgcaattataatgttttgaatttggtgtta |
45153646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 16 - 256
Target Start/End: Original strand, 24123378 - 24123618
Alignment:
| Q |
16 |
tcagtatttccatatatccggcttgcaccaagcagagctccctatgacgcagcgcatggctcaaagacatgtttctccttaagccctacgcttcatccaa |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24123378 |
tcagtatttccatatacccggcttgcaccaagcagagctccctatgaagcagcgcatggctcaaaggcatgtttctccttaagccctacgcttcatccaa |
24123477 |
T |
|
| Q |
116 |
gcggtcaactctgccaagaagatcaatcatgcaagtataacgttttgaagttgttgttacactgtatttttcattcattggatagaagtattcggctcct |
215 |
Q |
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|||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||||||||||||| |||||||||||| |
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| T |
24123478 |
gcggccagctctgccaagaagatcaatcatgcaagtataatgttttgaagttggtgttacattgtattcttcattcattggatagaattattcggctcct |
24123577 |
T |
|
| Q |
216 |
gtgtctagcaaaccagtatatatgacaacaagcagaaagaa |
256 |
Q |
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|||||||||||| || ||||||| || |||||||||||||| |
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| T |
24123578 |
gtgtctagcaaagcaatatatataactacaagcagaaagaa |
24123618 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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