View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20214_high_16 (Length: 310)

Name: NF20214_high_16
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20214_high_16
NF20214_high_16
[»] chr4 (1 HSPs)
chr4 (25-310)||(21445149-21445422)


Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 25 - 310
Target Start/End: Complemental strand, 21445422 - 21445149
Alignment:
Q  25 taaagaccaagcttgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagccggt 124  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21445422 taaagaccaagcttgatgttgtggagcttggagctaaaatccatgggattaaataccgccaaaatctcgaccaattccttagaactagaagtgagccggt 21445323  T
Q  125 gccaatagcggtgccaatagcagtggcatctcaagaacccttttgcgcttatccttcgttacttgctgaaaagagtgagaagaaactatcatcaaatggt 224  Q
    |||||||||            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21445322 gccaatagc------------agtggcatctcaagaacccttttgcgcttatccttcgttacttgcagaaaagagtgagaagaaactatcatcaaatggt 21445235  T
Q  225 agagccaaattaagaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctctctgctcctcctca 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||    
T  21445234 agagccaaattaagaaaacgttctcttagtattcctgcattaggaaagcatagttcagctgatccaatcctttctggtgctcctca 21445149  T

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