View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_high_22 (Length: 240)
Name: NF20214_high_22
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 42889964 - 42890171
Alignment:
| Q |
19 |
atcatcctccaattaactttttccatttcataccatgaggcatcacaataagtgtgtacgtgacactctacattgatgacacacttgaatcctacacata |
118 |
Q |
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| T |
42889964 |
atcatcctccaattaactttttccatttcataccatgaggcatcacaataagtgtgtacgtgacactctacattgatgacacacttgaatcctacacata |
42890063 |
T |
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| Q |
119 |
ctt-gaacacacatatattagaaaaattgtttcttcgctatgttgtcatcgaaacatcaaacgatgtttctttgatttgttgtcatcaaaatattcagtg |
217 |
Q |
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| T |
42890064 |
cttagaacacacatatattagaaaaattgtttcttcgctatgttgtcatcgaaacatcaaacaatgtttctttgatttgttgtcatcaaaatattcggtg |
42890163 |
T |
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| Q |
218 |
tgaagtat |
225 |
Q |
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|||||||| |
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| T |
42890164 |
tgaagtat |
42890171 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 222
Target Start/End: Original strand, 12569570 - 12569637
Alignment:
| Q |
155 |
ctatgttgtcatcgaaacatcaaacgatgtttctttgatttgttgtcatcaaaatattcagtgtgaag |
222 |
Q |
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||||||| |||| |||||||| | |||||| |||||||||||| |||||||||||| | |||||||| |
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| T |
12569570 |
ctatgttaacatcaaaacatcatatgatgttcctttgatttgttatcatcaaaatatacggtgtgaag |
12569637 |
T |
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