View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_high_5 (Length: 467)
Name: NF20214_high_5
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 24532240 - 24532705
Alignment:
| Q |
1 |
tcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24532240 |
tcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg |
24532339 |
T |
|
| Q |
101 |
tttgaggaattgggtctgggtgatggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat |
200 |
Q |
| |
|
||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24532340 |
tttgaggaattgggtctgggtaaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat |
24532439 |
T |
|
| Q |
201 |
catgaatatttatacaaaaatacataaattcataaccaataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactgtaatatc |
300 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24532440 |
catgaatatttatacagaaatacataaattcataaccaataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacaccttaatatc |
24532539 |
T |
|
| Q |
301 |
gaatattatgtatgttatcaatccgtcattaacaatatgtatcttccatatggttgcgcatt------------atgt-----ctagagaaacttctttc |
383 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |||| | || |||||||||||||||| |
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| T |
24532540 |
gaatattatgtatgttatcaatccatcattaacaatatatatcttccatatggttgcacatttgactatccataacgtttctagtagagaaacttctttc |
24532639 |
T |
|
| Q |
384 |
atcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataacc |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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|
| T |
24532640 |
atcatttgcactcgccacaagcaacaataatgctagcttcaaaactaagtgcgacattggataacc |
24532705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 24525568 - 24526034
Alignment:
| Q |
1 |
tcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg |
100 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525568 |
tcaaagtattggaaggtatcagcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg |
24525667 |
T |
|
| Q |
101 |
tttgaggaattgggtctgggtgatggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat |
200 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525668 |
tttgaggaattgggtctgggtgaaggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat |
24525767 |
T |
|
| Q |
201 |
catgaatatttatacaaaa-atacataaattcataaccaataaatgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactgtaatat |
299 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
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|
| T |
24525768 |
catgaatatttataaaaaatatacataaattcataaccaataaatgatgacaccattatgtctatgcaaaataattagagaaatgtagacaccttaatat |
24525867 |
T |
|
| Q |
300 |
cgaatattatgtatgttatcaatccgtcattaacaatatgtatcttccatatggttgcgcatt------------atgt-----ctagagaaacttcttt |
382 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | || |||| |||||||||| |
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|
| T |
24525868 |
cgaatattatgtatgttatcaatccgtcattaacaatatatatcttccatatggttgcgcatttgactatccataacgtttctagtagaaaaacttcttt |
24525967 |
T |
|
| Q |
383 |
catcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataacc |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24525968 |
catcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataacc |
24526034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 290516 - 290991
Alignment:
| Q |
1 |
tcaatgtattggaaggtatcggcttggtgaaaattcatcttttaggtattacgcagtgccaaggccattctttaataaagatgtaaacacattggtcttg |
100 |
Q |
| |
|
|||| |||| ||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
290516 |
tcaaagtatcggaaggtattggattggtgaaaattcatcttttaggttttacgcagtgccaaggccattcttaaataaagatgtaaacacgttggtcttg |
290615 |
T |
|
| Q |
101 |
tttgaggaattgggtctgggtgatggccctttcaatgtgtctgtcgacataatcagcatcgaatccagaaattttgttaagtgggatcaaggttgctcat |
200 |
Q |
| |
|
||||| || ||||||| ||||| ||||||||||||||||||||||||||| | |||| |||||||| |||||| ||||||||||||||||||||| || |
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|
| T |
290616 |
tttgaagagctgggtctaggtgaaggccctttcaatgtgtctgtcgacatagttagcaacgaatccaaaaatttcgttaagtgggatcaaggttgcatat |
290715 |
T |
|
| Q |
201 |
catgaatatttatacaaaaatacataaattcataaccaataaa-tgatgacaccattatgtctatgcaaaacaattagagaaatgtagacactgtaatat |
299 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| |||||||||| |||| | || | |||| |||||||||||||||||||| |||||| |
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|
| T |
290716 |
catgaatatttatacaaaaatatataaatttataaccaataaaatgatgacaccgttatctttaagaaaaataattagagaaatgtagacaccttaatat |
290815 |
T |
|
| Q |
300 |
cgaatatt-------------------atgtatgttatcaatccgtcattaacaatatgtatcttccatatggttgcgcat-----tatgtctagag--- |
372 |
Q |
| |
|
|||||| | |||||||||| ||||| ||||||||||||| |||||||||| ||||| | ||| ||| || || |
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|
| T |
290816 |
cgaatagttagcaatcaatcactatgtatgtatgttaccaatcaatcattaacaatatatatcttccatgtggtttcccatttgactatccataaagttt |
290915 |
T |
|
| Q |
373 |
-aaacttctttcatcatttgcactcgccacaagcaacaataatgctagcttcaaaagtaagtgcaacattggataa |
447 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
290916 |
ctaacttctttcttcatttgcactcgccacacgcaataataatgctagcttcaaaagtaagtgcatcattggataa |
290991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 280207 - 280266
Alignment:
| Q |
56 |
gtgccaaggccattctttaataaagatgtaaacacattggtcttgtttgaggaattgggt |
115 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||| ||||| |||||||||||| ||||| |
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|
| T |
280207 |
gtgccaaggtcattcttaaataatgatgtaaacacgttggttttgtttgaggaaatgggt |
280266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 6015876 - 6015796
Alignment:
| Q |
163 |
atccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacaaaaatacataaattcataaccaataaa |
243 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| | ||||| |||||||||||||||||| ||||||| |||||||||||| |
|
|
| T |
6015876 |
atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaa |
6015796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 163 - 243
Target Start/End: Complemental strand, 12252608 - 12252528
Alignment:
| Q |
163 |
atccagaaattttgttaagtgggatcaaggttgctcatcatgaatatttatacaaaaatacataaattcataaccaataaa |
243 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| | ||||| |||||||||||||||||| ||||||| |||||||||||| |
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|
| T |
12252608 |
atccagaaatttcaataagtggggtcaaaattgtttatcataaatatttatacaaaaatatataaatttataaccaataaa |
12252528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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