View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20214_high_8 (Length: 401)
Name: NF20214_high_8
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_high_8 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 36 - 390
Target Start/End: Complemental strand, 8168194 - 8167840
Alignment:
| Q |
36 |
aaatgtgaaactaaaaacaatccttcccaaaaaagagagttgctagagaatggaagagagttgttccaacaatttatttattgatattaacttactcatt |
135 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8168194 |
aaatgtgaaactaaaaacaatccttcacaaaaaagagagttgctagagaatggaagagagttgttccaacaatttatttattgatattaacttactcatt |
8168095 |
T |
|
| Q |
136 |
tcagcattacataattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgaaaaacaacatgggaaaat |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
8168094 |
tcagcattacataattggtatcaccaattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgacaaacaacaatggaaaat |
8167995 |
T |
|
| Q |
236 |
cttagacatgccaaatgaacatcaaatttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgtta |
335 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
8167994 |
cttagacatgccaaatgaacatcaaatttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaaattgtta |
8167895 |
T |
|
| Q |
336 |
acgaaatcgacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8167894 |
acgaaatcgacataaattattccaaatcgtactgtgtaccctgcatcccattcat |
8167840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 73 - 390
Target Start/End: Complemental strand, 8143348 - 8143018
Alignment:
| Q |
73 |
agttgctagagaatggaagagagttgttccaacaatttattt-attgatattaacttactcatttcagcat------------tacataattggtatcac |
159 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||| ||| ||||| ||| |||||||||||||| || ||||||||||||| |
|
|
| T |
8143348 |
agttgctagagaatgaaagatagttgttccaacaatttatttcatttatattgactcactcatttcagcatgcccttaaggtttatttaattggtatcac |
8143249 |
T |
|
| Q |
160 |
caattatctcaatacatatgaaagcaagtaatatactaaggtgacattggaaattcgaaaaacaacatgggaaaatcttagacatgccaaatgaacatca |
259 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
8143248 |
caattatctcaatacatatgagcgcaagtaacatactaaggtgacactggaaattcgacaaacaacaatggaaaatcttagacatgccaaatgaacatca |
8143149 |
T |
|
| Q |
260 |
aatttagtgttttcccttgagaagaaacttttgcagccaaaaagcagagtacttgggatatcttttcaaattgttaacgaaatcgacataaattattcca |
359 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
8143148 |
aatttagtgttttcccttgagaaggaacttttgcagccaaaaagcagagtacttgggatatctcttcaatttgttaacgaaatccacataaattattcca |
8143049 |
T |
|
| Q |
360 |
aatcgtactgtgtaccctgcatcccattcat |
390 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
8143048 |
aatcgtactgtgtaccctgcatcccattcat |
8143018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University