View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20214_low_1 (Length: 582)

Name: NF20214_low_1
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20214_low_1
NF20214_low_1
[»] chr3 (9 HSPs)
chr3 (39-71)||(50494388-50494420)
chr3 (39-70)||(747148-747179)
chr3 (19-68)||(17795622-17795669)
chr3 (19-68)||(19104062-19104109)
chr3 (39-69)||(28761286-28761316)
chr3 (39-68)||(10621366-10621395)
chr3 (39-68)||(23633833-23633862)
chr3 (39-68)||(31151725-31151754)
chr3 (39-68)||(38210760-38210789)
[»] chr7 (7 HSPs)
chr7 (39-70)||(25542947-25542978)
chr7 (39-69)||(1606798-1606828)
chr7 (19-68)||(24465928-24465975)
chr7 (39-68)||(13099317-13099346)
chr7 (39-68)||(20297781-20297810)
chr7 (39-68)||(28485984-28486013)
chr7 (39-68)||(38394405-38394434)
[»] chr6 (8 HSPs)
chr6 (39-70)||(26065959-26065990)
chr6 (39-69)||(12195353-12195383)
chr6 (39-68)||(8717195-8717224)
chr6 (39-68)||(11982872-11982901)
chr6 (39-68)||(15367469-15367498)
chr6 (39-68)||(25480317-25480346)
chr6 (39-68)||(26068235-26068264)
chr6 (39-68)||(29754549-29754578)
[»] chr5 (5 HSPs)
chr5 (39-70)||(31179211-31179242)
chr5 (39-69)||(34530558-34530588)
chr5 (39-68)||(3372977-3373006)
chr5 (39-68)||(27910843-27910872)
chr5 (39-68)||(41585580-41585609)
[»] chr1 (11 HSPs)
chr1 (39-70)||(23786249-23786280)
chr1 (39-68)||(2949079-2949108)
chr1 (39-68)||(8348905-8348934)
chr1 (39-68)||(9459277-9459306)
chr1 (39-68)||(9463104-9463133)
chr1 (39-68)||(16226578-16226607)
chr1 (39-68)||(16231973-16232002)
chr1 (39-68)||(16429358-16429387)
chr1 (39-68)||(24326072-24326101)
chr1 (39-68)||(39932485-39932514)
chr1 (39-71)||(17319292-17319324)
[»] chr4 (9 HSPs)
chr4 (39-69)||(2891751-2891781)
chr4 (39-68)||(6765306-6765335)
chr4 (39-68)||(11437826-11437855)
chr4 (39-72)||(14787270-14787303)
chr4 (39-68)||(16453767-16453796)
chr4 (39-68)||(16455685-16455714)
chr4 (39-68)||(16931631-16931660)
chr4 (39-68)||(16933988-16934017)
chr4 (39-68)||(22802577-22802606)
[»] chr2 (5 HSPs)
chr2 (39-69)||(36558720-36558750)
chr2 (39-68)||(11739421-11739450)
chr2 (39-68)||(22874490-22874519)
chr2 (39-68)||(36560981-36561010)
chr2 (39-68)||(45332020-45332049)
[»] scaffold0472 (1 HSPs)
scaffold0472 (39-68)||(6617-6646)
[»] scaffold0005 (1 HSPs)
scaffold0005 (39-72)||(52427-52460)
[»] chr8 (3 HSPs)
chr8 (39-68)||(14477711-14477740)
chr8 (39-68)||(21482769-21482798)
chr8 (39-68)||(24873039-24873068)


Alignment Details
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 50494388 - 50494420
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacacta 71  Q
    |||||||||||||||||||||||||||||||||    
T  50494388 ttggtgtgatttttcatcgaattcacaacacta 50494420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 747148 - 747179
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacact 70  Q
    ||||||||||||||||||||||||||||||||    
T  747148 ttggtgtgatttttcatcgaattcacaacact 747179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 17795622 - 17795669
Alignment:
Q  19 cacacatcaaatatatcattttggtgtgatttttcatcgaattcacaaca 68  Q
    |||||||||||| ||| |||  ||||||||||||||||||||||||||||    
T  17795622 cacacatcaaatttattatt--ggtgtgatttttcatcgaattcacaaca 17795669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 19104062 - 19104109
Alignment:
Q  19 cacacatcaaatatatcattttggtgtgatttttcatcgaattcacaaca 68  Q
    |||||||||||| ||| |||  ||||||||||||||||||||||||||||    
T  19104062 cacacatcaaatttattatt--ggtgtgatttttcatcgaattcacaaca 19104109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 28761316 - 28761286
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacac 69  Q
    |||||||||||||||||||||||||||||||    
T  28761316 ttggtgtgatttttcatcgaattcacaacac 28761286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 10621395 - 10621366
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  10621395 ttggtgtgatttttcatcgaattcacaaca 10621366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 23633833 - 23633862
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  23633833 ttggtgtgatttttcatcgaattcacaaca 23633862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 31151725 - 31151754
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  31151725 ttggtgtgatttttcatcgaattcacaaca 31151754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 38210760 - 38210789
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  38210760 ttggtgtgatttttcatcgaattcacaaca 38210789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 25542947 - 25542978
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacact 70  Q
    ||||||||||||||||||||||||||||||||    
T  25542947 ttggtgtgatttttcatcgaattcacaacact 25542978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 1606798 - 1606828
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacac 69  Q
    |||||||||||||||||||||||||||||||    
T  1606798 ttggtgtgatttttcatcgaattcacaacac 1606828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24465928 - 24465975
Alignment:
Q  19 cacacatcaaatatatcattttggtgtgatttttcatcgaattcacaaca 68  Q
    |||||||||||| ||| |||  ||||||||||||||||||||||||||||    
T  24465928 cacacatcaaatttattatt--ggtgtgatttttcatcgaattcacaaca 24465975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 13099346 - 13099317
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  13099346 ttggtgtgatttttcatcgaattcacaaca 13099317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 20297781 - 20297810
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  20297781 ttggtgtgatttttcatcgaattcacaaca 20297810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 28485984 - 28486013
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  28485984 ttggtgtgatttttcatcgaattcacaaca 28486013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 38394405 - 38394434
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  38394405 ttggtgtgatttttcatcgaattcacaaca 38394434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 26065990 - 26065959
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacact 70  Q
    ||||||||||||||||||||||||||||||||    
T  26065990 ttggtgtgatttttcatcgaattcacaacact 26065959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 12195383 - 12195353
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacac 69  Q
    |||||||||||||||||||||||||||||||    
T  12195383 ttggtgtgatttttcatcgaattcacaacac 12195353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 8717224 - 8717195
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  8717224 ttggtgtgatttttcatcgaattcacaaca 8717195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 11982901 - 11982872
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  11982901 ttggtgtgatttttcatcgaattcacaaca 11982872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 15367469 - 15367498
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  15367469 ttggtgtgatttttcatcgaattcacaaca 15367498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 25480317 - 25480346
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  25480317 ttggtgtgatttttcatcgaattcacaaca 25480346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 26068264 - 26068235
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  26068264 ttggtgtgatttttcatcgaattcacaaca 26068235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 29754578 - 29754549
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  29754578 ttggtgtgatttttcatcgaattcacaaca 29754549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Complemental strand, 31179242 - 31179211
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacact 70  Q
    ||||||||||||||||||||||||||||||||    
T  31179242 ttggtgtgatttttcatcgaattcacaacact 31179211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 34530588 - 34530558
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacac 69  Q
    |||||||||||||||||||||||||||||||    
T  34530588 ttggtgtgatttttcatcgaattcacaacac 34530558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 3373006 - 3372977
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  3373006 ttggtgtgatttttcatcgaattcacaaca 3372977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 27910843 - 27910872
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  27910843 ttggtgtgatttttcatcgaattcacaaca 27910872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 41585609 - 41585580
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  41585609 ttggtgtgatttttcatcgaattcacaaca 41585580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 70
Target Start/End: Original strand, 23786249 - 23786280
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacact 70  Q
    ||||||||||||||||||||||||||||||||    
T  23786249 ttggtgtgatttttcatcgaattcacaacact 23786280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 2949108 - 2949079
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  2949108 ttggtgtgatttttcatcgaattcacaaca 2949079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 8348934 - 8348905
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  8348934 ttggtgtgatttttcatcgaattcacaaca 8348905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 9459306 - 9459277
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  9459306 ttggtgtgatttttcatcgaattcacaaca 9459277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 9463133 - 9463104
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  9463133 ttggtgtgatttttcatcgaattcacaaca 9463104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 16226578 - 16226607
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16226578 ttggtgtgatttttcatcgaattcacaaca 16226607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 16231973 - 16232002
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16231973 ttggtgtgatttttcatcgaattcacaaca 16232002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 16429358 - 16429387
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16429358 ttggtgtgatttttcatcgaattcacaaca 16429387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 24326072 - 24326101
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  24326072 ttggtgtgatttttcatcgaattcacaaca 24326101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 39932485 - 39932514
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  39932485 ttggtgtgatttttcatcgaattcacaaca 39932514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 71
Target Start/End: Original strand, 17319292 - 17319324
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacacta 71  Q
    |||||| ||||||||||||||||||||||||||    
T  17319292 ttggtgcgatttttcatcgaattcacaacacta 17319324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Original strand, 2891751 - 2891781
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacac 69  Q
    |||||||||||||||||||||||||||||||    
T  2891751 ttggtgtgatttttcatcgaattcacaacac 2891781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 6765306 - 6765335
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  6765306 ttggtgtgatttttcatcgaattcacaaca 6765335  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 11437826 - 11437855
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  11437826 ttggtgtgatttttcatcgaattcacaaca 11437855  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Complemental strand, 14787303 - 14787270
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacactac 72  Q
    |||||||||||||||||||||||| |||||||||    
T  14787303 ttggtgtgatttttcatcgaattcgcaacactac 14787270  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 16453767 - 16453796
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16453767 ttggtgtgatttttcatcgaattcacaaca 16453796  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 16455685 - 16455714
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16455685 ttggtgtgatttttcatcgaattcacaaca 16455714  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 16931660 - 16931631
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16931660 ttggtgtgatttttcatcgaattcacaaca 16931631  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 16934017 - 16933988
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  16934017 ttggtgtgatttttcatcgaattcacaaca 16933988  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 22802606 - 22802577
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  22802606 ttggtgtgatttttcatcgaattcacaaca 22802577  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 36558750 - 36558720
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacac 69  Q
    |||||||||||||||||||||||||||||||    
T  36558750 ttggtgtgatttttcatcgaattcacaacac 36558720  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 11739450 - 11739421
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  11739450 ttggtgtgatttttcatcgaattcacaaca 11739421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 22874490 - 22874519
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  22874490 ttggtgtgatttttcatcgaattcacaaca 22874519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 36561010 - 36560981
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  36561010 ttggtgtgatttttcatcgaattcacaaca 36560981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 45332049 - 45332020
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  45332049 ttggtgtgatttttcatcgaattcacaaca 45332020  T

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Target: scaffold0472 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 6617 - 6646
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  6617 ttggtgtgatttttcatcgaattcacaaca 6646  T

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Target: scaffold0005 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 72
Target Start/End: Original strand, 52427 - 52460
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaacactac 72  Q
    |||||||||||||||||||||||| |||||||||    
T  52427 ttggtgtgatttttcatcgaattcgcaacactac 52460  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 14477711 - 14477740
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  14477711 ttggtgtgatttttcatcgaattcacaaca 14477740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 21482769 - 21482798
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  21482769 ttggtgtgatttttcatcgaattcacaaca 21482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 68
Target Start/End: Complemental strand, 24873068 - 24873039
Alignment:
Q  39 ttggtgtgatttttcatcgaattcacaaca 68  Q
    ||||||||||||||||||||||||||||||    
T  24873068 ttggtgtgatttttcatcgaattcacaaca 24873039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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