View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_11 (Length: 350)
Name: NF20214_low_11
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_11 |
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| [»] scaffold0187 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 5 - 332
Target Start/End: Original strand, 4011945 - 4012272
Alignment:
| Q |
5 |
tggatctattatgttacttcaggtgtcatcctcaaaacctataaacacagaatattccacaagtttcagaattaagctcattttgttgcatttgcaggaa |
104 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4011945 |
tggatctattatgttacttcagatgtcatcctcaaaacctataaacacagaatattccacaagttccagaattaagctcattttgttgcatttgcaggaa |
4012044 |
T |
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| Q |
105 |
accagaatcccaacatctattttaacaattgctagaacagcaaacccgactctaaagtagacagataaataaacgcacgaaagacagaaacagttgatca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012045 |
accagaatcccaacatctattttaacaattgctagaacagcaaacccgactctaaagtagacagataaataaacgcacgaaagacagaaacagttgatca |
4012144 |
T |
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| Q |
205 |
cagagtttggtcaattgagcctatgactacaaaaaacaaagtggccgttgttgttttctattatgcattgcttaaggttacaaagtacaaagttgtgatt |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4012145 |
cagagtttggtcaattgagcctatgactacaaaaaacaaagtggccgttgttgttttctattatgcattgcttaaggttacaaagtacaaagttgtgatt |
4012244 |
T |
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| Q |
305 |
aaatgctacattccatattacaagttta |
332 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4012245 |
aaatgctacattccatattacaagttta |
4012272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 5 - 332
Target Start/End: Complemental strand, 13977250 - 13976924
Alignment:
| Q |
5 |
tggatctattatgttacttcaggtgtcatcctcaaaacctataaacacagaatattccacaagtttcagaattaagctcattttgttgcatttgcaggaa |
104 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
13977250 |
tggatctattatgttacttcagatgtcatcctcaaaacctataaacacagaatattccacaagttccagaattaagctcattttgttgcatttgcaggaa |
13977151 |
T |
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| Q |
105 |
accagaatcccaacatctattttaacaattgctagaacagcaaacccgactctaaagtagacagataaataaacgcacgaaagacagaaacagttgatca |
204 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
13977150 |
accagaatcccaac-tctattttaacaattgctagaacagcaaacccgactctaaagtagacagataaataaaagcacgaaagacagaaacagttgatca |
13977052 |
T |
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| Q |
205 |
cagagtttggtcaattgagcctatgactacaaaaaacaaagtggccgttgttgttttctattatgcattgcttaaggttacaaagtacaaagttgtgatt |
304 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13977051 |
cagagtttggtcaattgagcctaagactacaaaaaacaaagtggccgttgttgttttctattatgcattgcttaaggttacaaagtacaaagttgtgatt |
13976952 |
T |
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| Q |
305 |
aaatgctacattccatattacaagttta |
332 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
13976951 |
aaatgctacattccatattacaagttta |
13976924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0187 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0187
Description:
Target: scaffold0187; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 332
Target Start/End: Original strand, 2010 - 2083
Alignment:
| Q |
258 |
ttttctattatgcattgcttaaggttacaaagtacaaagttgtgattaaatgctacattccatattacaagttta |
332 |
Q |
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| T |
2010 |
ttttctattatgcaatgtttagggttacaaactacaaa-ttgtgattcaatactactatccatattacaagttta |
2083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 182
Target Start/End: Original strand, 15853418 - 15853463
Alignment:
| Q |
137 |
tagaacagcaaacccgactctaaagtagacagataaataaacgcac |
182 |
Q |
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| T |
15853418 |
tagaacagcaaacccaattctaaagtgaacagataaataaacgcac |
15853463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 221
Target Start/End: Original strand, 4489138 - 4489220
Alignment:
| Q |
137 |
tagaacagcaaacccgactctaaagtagacagataaataaacgcacgaaagacagaaacagttgatcacagagtttggtcaattg |
221 |
Q |
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|||| ||||||||| | ||||||||| ||| |||||||||||||| ||| ||| |||||||||||| ||||||||| |||||| |
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| T |
4489138 |
tagaccagcaaacctggttctaaagtaaacatataaataaacgcac-aaaaaca-caacagttgatcatagagtttggccaattg |
4489220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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