View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_13 (Length: 336)
Name: NF20214_low_13
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 5 - 312
Target Start/End: Original strand, 9839364 - 9839671
Alignment:
| Q |
5 |
aagattttaaaaaatggcatagttacatcaaaatcctaaatatcacaagaagttataaacaaatatggtcgatgtggctgcaattacagtcgcgctgagg |
104 |
Q |
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| T |
9839364 |
aagattttaaaaaatggcatagttacatcaaaatcctaagtatcacaagaagttataaacaaatatggtcgatgtggctgcaattacagtcgcgctgagg |
9839463 |
T |
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| Q |
105 |
ttccaaaggcatcgaaaacctcgtatacaacaggcacaatctcggttgtacactgcaatttaaaaccttagtttaaactaaagatagaaaccttttgcta |
204 |
Q |
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| T |
9839464 |
ttccaaaggcatcgaaaacctcgtatacaacaggcacaatctcggttgtacactgcaatttaaaaccttagtttaaactaaagatagaaaccttttgcta |
9839563 |
T |
|
| Q |
205 |
ctcattaacaaactaaaggataaagataacttttgccacaagaatagtaggtggcatgtgaaggaaccataatcactgaattaataaaacaaacatgaag |
304 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9839564 |
ctcattaacaaacttaaggataaagataacttttgccacaagaatagtaggtggcatgtgaaggaaccataatcactgaattaataagacaaacatgaag |
9839663 |
T |
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| Q |
305 |
gtatatac |
312 |
Q |
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|||||||| |
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| T |
9839664 |
gtatatac |
9839671 |
T |
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