View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20214_low_15 (Length: 313)

Name: NF20214_low_15
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20214_low_15
NF20214_low_15
[»] chr4 (1 HSPs)
chr4 (1-295)||(31791442-31791736)


Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 31791442 - 31791736
Alignment:
Q  1 attctcattagggttatcttcattaaggttaatttttccactgttttctccaacatcaccaccagaatcagaaccattaccttccccaccatcatcactg 100  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31791442 attctcattagggttatcttcattaaggttaattttttcactgttttctccaacatcaccaccagaatcagaaccatcaccttccccaccatcatcactg 31791541  T
Q  101 ttgttgttttcctcaaagtttctttcaatataacattccctcataaatggtaaagaccaattagtagtagcaccctccttagaaatatagcaatcttgag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31791542 ttgttgttttcctcaaagtttctttcaatataacattccctcataaatggtaaagaccaattagtagtagcaccctccttagaaatatagcaatcttgag 31791641  T
Q  201 atgaagaagaagctgcgtagtttagtgataaagactccatgtttgcatagaccattcccattgaagaaaaagaagaagaacctaaaacatgtaaa 295  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31791642 atgaagaagaagctgcatagtttagtgataaagactccatgtttgcatagaccattcccattgaagaaaaagaagaagaacctaaaacatgtaaa 31791736  T

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