View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_18 (Length: 278)
Name: NF20214_low_18
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 7565236 - 7565488
Alignment:
| Q |
1 |
gtcttcaattttctggtacaaaggttccatgctaccatactacgatgttggtaatcgcattccactctgaaaaagatgatgccatcgcaagagtcaatca |
100 |
Q |
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| T |
7565236 |
gtcttcaattttctggtacaagggttccatgctaccatattacaatgtttgtaattgtattgcactctgaaaaagatgatgccatcgcaagagtcaatca |
7565335 |
T |
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| Q |
101 |
cctgagcatgaatctcacgagtctttaaagggaacttaatctttgtctctgggatggtgctaggtgagttgcttaaaatagagggaagttggaaatcgga |
200 |
Q |
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| T |
7565336 |
cgtgagcatgaatgtcacgagtgtttaaagggaacttaatctttgtctc---gatggtgctaggtgagttgcttaaaatagagcgaagttggaaatcgga |
7565432 |
T |
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| Q |
201 |
gagagtgaacttccttcttaaaaacataaacatactccgcgggcatctgaggaggtggtaat |
262 |
Q |
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| T |
7565433 |
gagactgaacttccttcttaa------aaacatattccacgggcatctgaggaggtggtaat |
7565488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 98
Target Start/End: Original strand, 1442652 - 1442681
Alignment:
| Q |
69 |
gaaaaagatgatgccatcgcaagagtcaat |
98 |
Q |
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| T |
1442652 |
gaaaaagatgatgccatcgcaagagtcaat |
1442681 |
T |
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