View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_19 (Length: 272)
Name: NF20214_low_19
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 35486842 - 35486612
Alignment:
| Q |
18 |
gttttaattacaattagaatcacagttcttccatatttcgactcaatgtatatgtagtatagcggtgtgttctttaatatctctatgtagatttcggaca |
117 |
Q |
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| T |
35486842 |
gttttaattacaattagaatcacagttcttccatatttcgactcaatgtatatgtagtatagcggtgtgttctttaatatctctatgtagatttcggaca |
35486743 |
T |
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| Q |
118 |
tatattatgctatgcttgagtgcttccttttgaggaagccttcattgaaaattaactttcattaatgccttgttgtatttaccaaattcgcttttaatta |
217 |
Q |
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| T |
35486742 |
tatattatgttatgc-------------tttgaggaagccttcattgaaaattaactttcattaatgccttgttgtatttaccaaattcgcttttaatta |
35486656 |
T |
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| Q |
218 |
tttctggaatataattctttgtcatttttgttttgttgatgatg |
261 |
Q |
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| T |
35486655 |
tttctggaatataattctttgtcgtttttgttttgttgatgatg |
35486612 |
T |
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