View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_2 (Length: 528)
Name: NF20214_low_2
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 9 - 508
Target Start/End: Original strand, 39229432 - 39229931
Alignment:
| Q |
9 |
ctagcattctctgagtatgcaagggtagggagagcactagccctatatgaaattggtgacagagaagaagcaatagcagagatggaagacgtttcaatat |
108 |
Q |
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| T |
39229432 |
ctagcattctctgagtatgcaagggtaggaagagcactagccctatatgaaattggtgacagagaagaagcaatagcagagatggaagacgtttcaatat |
39229531 |
T |
|
| Q |
109 |
cactaaaagggtatccaggtaagttcaatttcatagcaatttcgcaataaaatcacgctgtagnnnnnnnnttatcgcttttctctaatgctattttttc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39229532 |
cactaaaagggtatccaggtaagttcaatttcatagcactttcgcaataaaatcacgctgtagaaaaaaaattatcgcttttctctaatgctattttttc |
39229631 |
T |
|
| Q |
209 |
tcttgagcagaagtacatgcagctcttgcagcagctttatatgcagataagcatgctgcgttgcttgctgaaaaccagtttacaattgcaactcttcttg |
308 |
Q |
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| T |
39229632 |
tcttgagcagaagtacatgcagctcttgcagcagccttatatgcagataagcatgctgcgttgcttgctgaaaaccagtttacaattgcaactcttcttg |
39229731 |
T |
|
| Q |
309 |
atcctcattttacagatctttcatatgttagagacacaaagcactggcctccaagtttgattagttctctgcagcatttcattacactatcttaagacct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229732 |
atcctcattttacagatctttcatatgttagagacacaaagcactggcctccgagtttgattagttctctgcagcatttcattacactatcttaagacct |
39229831 |
T |
|
| Q |
409 |
tacattatatttatacgttttgtttaacacatactttagcagttatatgaaaactttctcaggtttggacctttattacaacttcaaatgtatacccttg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39229832 |
tacattatatttatacgttttgtttaacacatactttagcagttatatgaaaactttctcaggtttggacctttattacaacttcaaatgtatacccttg |
39229931 |
T |
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