View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_21 (Length: 249)
Name: NF20214_low_21
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 21445088 - 21444854
Alignment:
| Q |
1 |
ttggtagctttttcaataagctgtattacaaattacaatgtcctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaac |
100 |
Q |
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| T |
21445088 |
ttggtagctttttcaataagctgtattacaaattacaatgtcctgcatgtaaatactaaagtgaccaaaacttttttagatttctagggtcaaggtcaac |
21444989 |
T |
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| Q |
101 |
tttaaggtatcgtttttgcatgaataatatccaaaaaatatatcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataat |
200 |
Q |
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| T |
21444988 |
tttaaggtatcgtttttgcatgaataatatccaaaaaatatatcttattgttatactggtttccattttggtttttgctttgttctaaagaatatataat |
21444889 |
T |
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| Q |
201 |
ttagacacattatggtttcaacattatttgacaat |
235 |
Q |
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|||||||||||||||||||| |||||||||||||| |
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| T |
21444888 |
ttagacacattatggtttcatcattatttgacaat |
21444854 |
T |
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