View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20214_low_24 (Length: 239)
Name: NF20214_low_24
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_24 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 17242519 - 17242292
Alignment:
| Q |
1 |
tatattaacgtttgattttt-agatttaatcaatttgtttaataactttttgtttgaccaaaaataacttctttttgaccaaaaataaatatattataca |
99 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
17242519 |
tatatgaacgtttgattttttagatttaatcaatttgtttaataactttttgtttgaccaaaaataacttctttttgaccaaaaataaatatattatata |
17242420 |
T |
|
| Q |
100 |
agtatttttaggggtgtacaaggtttggatcaatccagaaaatctagtcaaactcataaaaataactcataaaggtgggttggatcggatattacgagtg |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17242419 |
agtatttttaggggtgtacaaggtttggatcaatccgaaaaatctagtcaaactcataaaaataactcataaaggtgggttggatcggatattacaagtg |
17242320 |
T |
|
| Q |
200 |
agttatgttgttgaattagtgtaatttg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
17242319 |
agttatgttgttgaattagtgtaatttg |
17242292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 20159482 - 20159444
Alignment:
| Q |
189 |
tattacgagtgagttatgttgttgaattagtgtaatttg |
227 |
Q |
| |
|
||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
20159482 |
tattatgagtgagttatgttgttgaattggtgtaatttg |
20159444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University