View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_3 (Length: 502)
Name: NF20214_low_3
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 17 - 489
Target Start/End: Original strand, 23933392 - 23933863
Alignment:
| Q |
17 |
agctgcaatgttacatgtaacattctgaaacacctgttgttcttcaatcggcgtatccatcaaattccagagctccaataatgatgttgctagatcttga |
116 |
Q |
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| T |
23933392 |
agctgcgatgttacatgtaacattctgaaacacctgttgttcttcaatcggcgtatccatcaaattccagagctccaataatgatgttgctagatcttga |
23933491 |
T |
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| Q |
117 |
agctgccagatcataatcaatttataagtttcaacctgnnnnnnnnnnnntcatgaaacgaaaattataaaacgaagttatgttccataccttttgcatt |
216 |
Q |
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| T |
23933492 |
agctgccagatcataatcaatttataagtttcaacctgagaaaacaaaaatcatgaaacgaaa-ttataaaacgaagttatgttccataccttttgcatt |
23933590 |
T |
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| Q |
217 |
ctctgcaatttcactcctctcagttcttgtatagataaagccaattggcttatggtatcgttatttacactcctggatccttccgaatttcctaaactag |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23933591 |
ctctgcaatttcactcctctcagttcttgtatagataaagccaattggcttatggtatcgttatttacactcctggatccttccgaatttcctaaactag |
23933690 |
T |
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| Q |
317 |
gatggacttcgctaactgtctgcttaaagtctaaaccaagtactgaacagagagaacttaaagtgtgcagattatcttggaccttcttgagacgatcact |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
23933691 |
gatggacttcgctaactgtctgcttaaagtctaaaccaagtactgaacagagagaacttaaagtgtgcagattgtcttggaccttcttgagacgatcact |
23933790 |
T |
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| Q |
417 |
ctgcattatcaaaaataaaataccatcactcggtaataaacagcaataaatatgatattttgggttcatagaa |
489 |
Q |
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| T |
23933791 |
ctgcattattaaaaataaaatatcatcactcggtaataaacagcaataaatatgatattttgggttcatagaa |
23933863 |
T |
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Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 34236290 - 34236193
Alignment:
| Q |
27 |
ttacatgtaacattctgaaacacctgttgttcttcaatcggcgtatccatcaaattccagagctccaataatgatgttgctagatcttgaagctgcca |
124 |
Q |
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||||| |||||||||||||||| ||| || |||||||| || |||||||||| |||||||||||||| | || |||||| |||||||| |||||||| |
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| T |
34236290 |
ttacaagtaacattctgaaacatctgctgctcttcaataggtgtatccatcaggttccagagctccaacattgttgttgcaagatcttggagctgcca |
34236193 |
T |
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