View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_4 (Length: 468)
Name: NF20214_low_4
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 20 - 465
Target Start/End: Complemental strand, 38521812 - 38521359
Alignment:
| Q |
20 |
attctgttgtggatggtcttatgacataagttagcatgacc-tttaaaaaattattctaatcaaatactcgaaggagattgtctctannnnnnnnctctg |
118 |
Q |
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||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
38521812 |
attctgttgtggatgatcttatgacacaagttagcatgaccctttaaaaaattattctaatgaaatactcgaaggagattgtctctattttttttctctc |
38521713 |
T |
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| Q |
119 |
aagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaatgttatgannnnnnnnnnnntataattaagggtttggatgccagcacaaca |
218 |
Q |
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| T |
38521712 |
aagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaatgttatgaaaagagagagagtataattaagggtttagatgccagcacaaca |
38521613 |
T |
|
| Q |
219 |
acaaaaactgctagagaagttcctctcctgtaaatgcattctcctnnnnnnntgtaaatacactctatcaagtgctttggaacaataacaatattacatt |
318 |
Q |
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| T |
38521612 |
acaaaaactgctagagaagttcctctcctttaaatgcattctcctaaaaaaatgtaaatacactctatcaagtgctttggaacaataacaatattacatt |
38521513 |
T |
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| Q |
319 |
ttggtgtcctaagtcctaa-------ctgcaagggtaagaaagtataatcctagtcgatgatcatgacttttgaagagtgccatttccttgagaggtagg |
411 |
Q |
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| T |
38521512 |
ttggtgtcctaagtcctaagtcctaactgcaagggtaagaaagtataatcctagtcgatgatcatgacttttgaagagtgtcatttccttgagaggtagg |
38521413 |
T |
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| Q |
412 |
tgtttttagcttctttctaatcgacaacggatttaggatagtctgtgctgctcc |
465 |
Q |
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| T |
38521412 |
tgtttttagcttctttctaatcgacaacggatttaggatagtgtgtggtgctcc |
38521359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 36695972 - 36696025
Alignment:
| Q |
119 |
aagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaatgtta |
172 |
Q |
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| T |
36695972 |
aagtgtgatcttcgccgtccattataaaagtgagagaatgtgtttttaatgtta |
36696025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 36712073 - 36712126
Alignment:
| Q |
119 |
aagtgtgatctttactatccattataaaagtgaaagaaggtgtttttaatgtta |
172 |
Q |
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|||||||||||| | |||||||||||||||| |||| ||||||||||||||| |
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| T |
36712073 |
aagtgtgatcttcgccgtccattataaaagtgagagaatgtgtttttaatgtta |
36712126 |
T |
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