View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20214_low_6 (Length: 439)

Name: NF20214_low_6
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20214_low_6
NF20214_low_6
[»] scaffold0076 (1 HSPs)
scaffold0076 (39-402)||(6713-7062)
[»] chr6 (11 HSPs)
chr6 (95-250)||(4845902-4846057)
chr6 (231-355)||(19697845-19697970)
chr6 (207-385)||(3835629-3835808)
chr6 (206-385)||(24044903-24045072)
chr6 (203-335)||(14579582-14579716)
chr6 (274-354)||(6591850-6591930)
chr6 (214-280)||(19973657-19973723)
chr6 (209-279)||(19976070-19976140)
chr6 (16-71)||(4846052-4846107)
chr6 (241-338)||(2936165-2936262)
chr6 (295-348)||(15518074-15518127)
[»] chr1 (13 HSPs)
chr1 (16-209)||(9111649-9111840)
chr1 (250-385)||(9111511-9111646)
chr1 (231-354)||(12141653-12141777)
chr1 (258-384)||(24981133-24981259)
chr1 (237-353)||(43254114-43254230)
chr1 (231-330)||(1953680-1953780)
chr1 (231-338)||(38825494-38825602)
chr1 (214-354)||(4242570-4242708)
chr1 (258-354)||(47580415-47580513)
chr1 (231-353)||(38828689-38828812)
chr1 (262-385)||(49387576-49387699)
chr1 (203-269)||(21501345-21501411)
chr1 (231-354)||(51465487-51465601)
[»] chr4 (11 HSPs)
chr4 (181-385)||(895387-895590)
chr4 (241-354)||(6667720-6667834)
chr4 (233-354)||(13010534-13010655)
chr4 (237-353)||(31767450-31767566)
chr4 (238-354)||(44643452-44643568)
chr4 (241-354)||(6671392-6671500)
chr4 (13-68)||(895312-895367)
chr4 (241-353)||(13250527-13250640)
chr4 (309-354)||(20058104-20058149)
chr4 (241-353)||(43287851-43287964)
chr4 (221-383)||(4747173-4747332)
[»] chr5 (5 HSPs)
chr5 (231-423)||(18594807-18595000)
chr5 (259-423)||(39292120-39292284)
chr5 (225-321)||(13291940-13292037)
chr5 (260-354)||(26703018-26703113)
chr5 (260-354)||(26972751-26972846)
[»] scaffold0028 (2 HSPs)
scaffold0028 (238-360)||(127700-127822)
scaffold0028 (238-353)||(110121-110236)
[»] chr8 (11 HSPs)
chr8 (231-354)||(1788900-1789024)
chr8 (91-238)||(41739941-41740090)
chr8 (258-384)||(17028375-17028501)
chr8 (258-384)||(17558811-17558937)
chr8 (258-354)||(39655700-39655796)
chr8 (258-354)||(21185322-21185418)
chr8 (319-402)||(17088721-17088806)
chr8 (231-354)||(38678679-38678800)
chr8 (231-308)||(38676300-38676378)
chr8 (317-354)||(38676893-38676930)
chr8 (14-57)||(41740144-41740187)
[»] chr3 (9 HSPs)
chr3 (223-422)||(2353181-2353382)
chr3 (210-418)||(26445029-26445239)
chr3 (204-338)||(9372229-9372365)
chr3 (237-383)||(19930008-19930153)
chr3 (218-334)||(14658109-14658225)
chr3 (179-276)||(16366445-16366537)
chr3 (207-293)||(14654840-14654929)
chr3 (16-82)||(16366541-16366608)
chr3 (281-383)||(42253534-42253635)
[»] chr2 (11 HSPs)
chr2 (231-354)||(2590493-2590617)
chr2 (238-360)||(21189401-21189524)
chr2 (241-353)||(18739113-18739226)
chr2 (214-301)||(27107279-27107367)
chr2 (241-337)||(1043148-1043244)
chr2 (231-384)||(14433570-14433725)
chr2 (231-354)||(35969278-35969398)
chr2 (216-272)||(8424424-8424480)
chr2 (262-321)||(27083123-27083183)
chr2 (365-423)||(8388379-8388439)
chr2 (198-269)||(27083189-27083263)
[»] chr7 (11 HSPs)
chr7 (231-354)||(11673994-11674117)
chr7 (207-385)||(13815707-13815885)
chr7 (238-354)||(31210076-31210193)
chr7 (238-354)||(15569566-15569682)
chr7 (238-354)||(31206627-31206744)
chr7 (231-354)||(39426452-39426576)
chr7 (222-383)||(2609574-2609735)
chr7 (282-384)||(22301122-22301224)
chr7 (231-354)||(3850540-3850665)
chr7 (233-352)||(32352432-32352551)
chr7 (213-321)||(15169910-15170019)
[»] scaffold0014 (1 HSPs)
scaffold0014 (258-354)||(82642-82738)
[»] scaffold0002 (1 HSPs)
scaffold0002 (209-321)||(448692-448802)
[»] scaffold0216 (1 HSPs)
scaffold0216 (215-314)||(12090-12190)
[»] scaffold0293 (1 HSPs)
scaffold0293 (258-338)||(4942-5022)


Alignment Details
Target: scaffold0076 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 39 - 402
Target Start/End: Complemental strand, 7062 - 6713
Alignment:
Q  39 ataacatagtgctttttacgatggacaataccagaagcacgctttttaccagaagcataccaaaatatatactttctttttagcaatttggggagacact 138  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7062 ataagatagtgctttttacgatggacaataccagaagcacgctttt-accagaagcataccaaaatatatactttctttttagcaatttggagagacact 6964  T
Q  139 tcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaa 238  Q
    ||||||||||||||||||||||||||||||||||  ||| ||||||             |||||||| ||||||||||||||||||||||||||||| ||    
T  6963 tcttgatcagaaaaataccacttttccaccaacataaaaactcttt-------------ttttcttcgtgggttacatctcctgtgtttatcaaattcaa 6877  T
Q  239 gttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 338  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||  ||||||||| | | |||||| |||||||||||||| ||||||||    
T  6876 gttgttctgtcatctctgatatgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagtga 6777  T
Q  339 gtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacatgagttgttgataga 402  Q
     ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||    
T  6776 ctatgtcacgcctcagtttagataatggtttattgttttgcaggttacataagttgttgataga 6713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 4e-73; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 4846057 - 4845902
Alignment:
Q  95 ataccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttcc 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  4846057 ataccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacaaaagctctttctttcttccc 4845958  T
Q  195 aatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtca 250  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  4845957 aatttttcttcctgggttacatctcccgtgtttatcaaattcaagttgttctgtca 4845902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 231 - 355
Target Start/End: Complemental strand, 19697970 - 19697845
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  19697970 aaatttgagttgttctgtcacctccgattatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 19697871  T
Q  330 ggacagtgagtatgtcacgcctcagt 355  Q
    ||||| ||| ||||||||||||||||    
T  19697870 ggacaatgactatgtcacgcctcagt 19697845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 207 - 385
Target Start/End: Complemental strand, 3835808 - 3835629
Alignment:
Q  207 tgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgc 305  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||    
T  3835808 tgggttgcatctcttgtgtttatcaaattcaagttgttctgtcacctctgatatgatttatatcagagaagaatttgttgtatcctgagaggatatgcgc 3835709  T
Q  306 ctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctca-gtttagagaatggtttattgttttgcaggtta 385  Q
     | |||||  ||  ||||||| |||||| ||||   | |||| ||||| |||||   ||||||||| ||||||||||||||    
T  3835708 ttatgagg-tgaataaatccttaaggacggtgatcttatcacacctcatgtttatgcaatggtttactgttttgcaggtta 3835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 206 - 385
Target Start/End: Complemental strand, 24045072 - 24044903
Alignment:
Q  206 ctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcg 304  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |          |||||||||| |||||||||||| |||||||||||    
T  24045072 ctgggttgcatctcctgtgtttatcatatttaagttgttctgtcacctctgatgt----------agggaagaacatgttgtatcctgggaggatatgcg 24044983  T
Q  305 cctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtta 385  Q
    | | |||||| ||  ||||||| ||||||||||| | ||||||||||||  ||| | ||||| ||| ||||| ||||||||    
T  24044982 cttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggtta 24044903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 203 - 335
Target Start/End: Original strand, 14579582 - 14579716
Alignment:
Q  203 ttcctgggttacatc--tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggat 299  Q
    |||||||||| ||||  |||| || |||||||||| ||||||||||||||||||| | ||||||||| |||| |||||| ||||||||||||||||||||    
T  14579582 ttcctgggtttcatcattcctctgattatcaaattcaagttgttctgtcacctcttacatgattcatgtcagagaagaacctgttgtatcctgagaggat 14579681  T
Q  300 atgcgcctttgaggcagataaaatcctcaaggacag 335  Q
    || ||| | |||||| ||| ||||||| ||||||||    
T  14579682 attcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 274 - 354
Target Start/End: Complemental strand, 6591930 - 6591850
Alignment:
Q  274 gaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    |||||||||||| |||||| |||||||||||| | |||||| ||||||||||||||||||||||| || ||||||||||||    
T  6591930 gaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcag 6591850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 19973657 - 19973723
Alignment:
Q  214 catctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac 280  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||    
T  19973657 catctcctgtgtttatcaaattcgagttgttctgtcacctctgatttgattcatatcagagaagaac 19973723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 19976070 - 19976140
Alignment:
Q  209 ggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa 279  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| | |||||||||||||||| ||||||    
T  19976070 ggtttcatctcctgtggttatcaaattcgagttgttctgtcacctttaatatgattcatatcagagaagaa 19976140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 4846107 - 4846052
Alignment:
Q  16 atatcttgggagtatatatgataataacatagtgctttttacgatggacaatacca 71  Q
    ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  4846107 atatcttcggagtatatatgataataagatagtactttttacaatggacaatacca 4846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 2936262 - 2936165
Alignment:
Q  241 tgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 338  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||| ||||| ||| | ||||||||| | |||||| ||| ||||||| |||||||||||    
T  2936262 tgttctgtcacctctgatgtgatttatatcagagaagaacatgtggtatcttgaaaagatatgcgcttatgaggcggat-aaatccttaaggacagtga 2936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 295 - 348
Target Start/End: Original strand, 15518074 - 15518127
Alignment:
Q  295 aggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacg 348  Q
    ||||||||||| | |||||| |||| |||||||||||| ||||| |||||||||    
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacg 15518127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 9111840 - 9111649
Alignment:
Q  16 atatcttgggagtatatatgataataacatagtgctttttacgatggacaataccagaagcacgctttttaccagaagcata-ccaaaatatatactttc 114  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||    
T  9111840 atatgttggaagtatatatgataataacacagtgctttttacgatggacaatagctgaagcacgctttttaccagaagcatacccaaaatatatactttc 9111741  T
Q  115 tttttagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgg 209  Q
    ||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  9111740 tttttag-aattt-gggaaacacttcttgatcag-aaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcctgg 9111649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 250 - 385
Target Start/End: Complemental strand, 9111646 - 9111511
Alignment:
Q  250 acctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgc 349  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||| | |||||| ||||||||||||||||||||||| ||||||||||    
T  9111646 acctctgatatgatttatatcagtgaagaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgc 9111547  T
Q  350 ctcagtttagagaatggtttattgttttgcaggtta 385  Q
    ||||| ||| | ||  ||||| | ||||||||||||    
T  9111546 ctcagattatataacagtttactattttgcaggtta 9111511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 12141777 - 12141653
Alignment:
Q  231 aaatttaagttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| |||||||||||||||||| | ||||||||||| | ||||| || |||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  12141777 aaatttgagttgttctgtcacctctagttatgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 12141678  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| |||||||||||||||    
T  12141677 ggacagtgactatgtcacgcctcag 12141653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 258 - 384
Target Start/End: Complemental strand, 24981259 - 24981133
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 357  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||| || | |||||| ||||||||||||||||||  ||| ||||||||||||||| ||    
T  24981259 tatgattcataacggggaagaactgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggtt 24981160  T
Q  358 agagaatggtttattgttttgcaggtt 384  Q
    | | ||| || | ||||||||||||||    
T  24981159 acataatagtattttgttttgcaggtt 24981133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 353
Target Start/End: Original strand, 43254114 - 43254230
Alignment:
Q  237 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 335  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||| | |||||| ||  ||||||| ||||||||    
T  43254114 aagttgttctgtcacctctgatatgattcatatatgggaagaacatgttgtatcctgggaggatatgcgcttatgaggc-gaataaatccttaaggacag 43254212  T
Q  336 tgagtatgtcacgcctca 353  Q
    ||| | ||||||||||||    
T  43254213 tgactttgtcacgcctca 43254230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 231 - 330
Target Start/End: Original strand, 1953680 - 1953780
Alignment:
Q  231 aaatttaagttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||    
T  1953680 aaatttgagttgttctgtcacctcccgttatgattcataacagggaagaactgttgtatcctgggaggatattcgcttatgaggcagataaaatcctcaa 1953779  T
Q  330 g 330  Q
    |    
T  1953780 g 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 231 - 338
Target Start/End: Complemental strand, 38825602 - 38825494
Alignment:
Q  231 aaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||| |||||||||||  | |||||  ||||||||||| ||    
T  38825602 aaattcaagttgttctgccacctttgatatgattcatagcagagaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaa 38825503  T
Q  330 ggacagtga 338  Q
    |||||||||    
T  38825502 ggacagtga 38825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 214 - 354
Target Start/End: Complemental strand, 4242708 - 4242570
Alignment:
Q  214 catctcctgtgtttatcaaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgag 312  Q
    ||||||||||||||||   |||  ||||||||||||||||  ||| |||||||||| | ||||||||| ||||||||||| ||||||||||||   ||||    
T  4242708 catctcctgtgtttat---attcgagttgttctgtcaccttcgattatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgag 4242612  T
Q  313 gcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
     | |||||||||||||||||||  || ||||||||| |||||    
T  4242611 tcggataaaatcctcaaggacaacgattatgtcacgtctcag 4242570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 258 - 354
Target Start/End: Original strand, 47580415 - 47580513
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctga--gaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    ||||||||||| | ||||||| |||||||||||||   |||||||| ||| | |||||||||||||||| ||||||||| ||| |||||||||||||||    
T  47580415 tatgattcataacggggaagacctgttgtatcctggtggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgcctcag 47580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 231 - 353
Target Start/End: Complemental strand, 38828812 - 38828689
Alignment:
Q  231 aaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    ||||| ||||||||||| || |||||||||||||||||  |||||||||| |||| ||||||| || |||||| || | | |||| ||||||||||| ||    
T  38828812 aaattcaagttgttctgccaactctgatatgattcatagtagggaagaacttgttttatcctgggaagatatgagcttataaggcggataaaatccttaa 38828713  T
Q  330 ggacagtgagtatgtcacgcctca 353  Q
    ||| ||||| |  |||||||||||    
T  38828712 ggatagtgacttcgtcacgcctca 38828689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 262 - 385
Target Start/End: Complemental strand, 49387699 - 49387576
Alignment:
Q  262 attcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttaga 360  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||| | | ||||  ||||| |||| |||| |||||| | ||||||||||||  ||| |    
T  49387699 attcacatcagggaagaacatgttgtatcctgggaggatatgcgcttataaggcgaataaa-tccttaaggccagtgactttgtcacgcctcatgttata 49387601  T
Q  361 gaatggtttattgttttgcaggtta 385  Q
     ||||| ||| ||||| ||||||||    
T  49387600 taatggattactgtttggcaggtta 49387576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 269
Target Start/End: Complemental strand, 21501411 - 21501345
Alignment:
Q  203 ttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatat 269  Q
    ||||||||||| ||||| ||||||||  ||||| |||||||||| ||| ||||||||||||| ||||    
T  21501411 ttcctgggttatatctcttgtgtttagaaaattcaagttgttctatcatctctgatatgattgatat 21501345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 51465487 - 51465601
Alignment:
Q  231 aaatttaagttgttctgtcacctctga-tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||| ||||| || ||||||||||| | || ||||||||||||||||||  || ||||||||          |||||||||  |||    
T  51465487 aaatttgagttgttctgtaacctccgagtatgattcataacgggaaagaactgttgtatcctggaagaatatgcgc----------gataaaatctccaa 51465576  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| |||||||||||||||    
T  51465577 ggacagtgactatgtcacgcctcag 51465601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 5e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 181 - 385
Target Start/End: Original strand, 895387 - 895590
Alignment:
Q  181 ctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac 280  Q
    ||||||||||| ||||||||||||||| | |||| |||||||||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||||||    
T  895387 ctttctttcttcccaatttttcttcctag-ttacttctcctgtgtttattaaattcaacttgttctatcacctctgatatgattcatattagggaagaac 895485  T
Q  281 tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgca 380  Q
    | |||||||||| |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||| ||||| ||||| ||  ||||| | |||||||    
T  895486 ttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgactcaggttagataacagtttactattttgca 895585  T
Q  381 ggtta 385  Q
    |||||    
T  895586 ggtta 895590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 6667834 - 6667720
Alignment:
Q  241 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 339  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| |||||||     
T  6667834 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgac 6667735  T
Q  340 tatgtcacgcctcag 354  Q
    |||||||||||||||    
T  6667734 tatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 233 - 354
Target Start/End: Complemental strand, 13010655 - 13010534
Alignment:
Q  233 atttaagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaagga 332  Q
    |||| |||||||||||||| || | |||||||| || | | ||||||||||| ||||||  |||||||||||| | |||||| |||||||||||||||||    
T  13010655 atttgagttgttctgtcacatccgttatgattcgtaacggagaagaactgttatatcctaggaggatatgcgcttatgaggcggataaaatcctcaagga 13010556  T
Q  333 cagtgagtatgtcacgcctcag 354  Q
    |||||| |||||||||||||||    
T  13010555 cagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 237 - 353
Target Start/End: Complemental strand, 31767566 - 31767450
Alignment:
Q  237 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 335  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||| || | |||||| ||| ||||||| ||||| ||    
T  31767566 aagttgttctgtcacctctgatgtgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcggat-aaatccttaaggatag 31767468  T
Q  336 tgagtatgtcacgcctca 353  Q
    ||| | ||||||||||||    
T  31767467 tgattttgtcacgcctca 31767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 238 - 354
Target Start/End: Original strand, 44643452 - 44643568
Alignment:
Q  238 agttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 336  Q
    ||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||  |||||||||||| | |||||| |||| ||| || |||||||||    
T  44643452 agttgttctgtcatctctggttatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaat-ctgaaggacagt 44643550  T
Q  337 gagtatgtcacgcctcag 354  Q
    || |||||||||||||||    
T  44643551 gactatgtcacgcctcag 44643568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 241 - 354
Target Start/End: Complemental strand, 6671500 - 6671392
Alignment:
Q  241 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 339  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||| ||||||||||      ||||| |||||||||||||||||| ||||     
T  6671500 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgc------gaggcggataaaatcctcaaggacggtgac 6671407  T
Q  340 tatgtcacgcctcag 354  Q
    |||||||||||||||    
T  6671406 tatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 895312 - 895367
Alignment:
Q  13 aatatatcttgggagtatatatgataataacatagtgctttttacgatggacaata 68  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  895312 aatatatcttgggagtatatatgataataacatagtgttttttactatggacaata 895367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 13250640 - 13250527
Alignment:
Q  241 tgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgag-aggatatgcgcctttgaggcagataaaatcctcaaggacagtga 338  Q
    |||||||||||| ||||| ||||||||||||||||||||| | ||||||||| || ||||||||||| | |||||  ||| ||||| | ||||| |||||    
T  13250640 tgttctgtcaccactgatgtgattcatatcagggaagaacatattgtatcctaagaaggatatgcgcttatgaggtggat-aaatctttaaggagagtga 13250542  T
Q  339 gtatgtcacgcctca 353  Q
     | ||||||||||||    
T  13250541 ctttgtcacgcctca 13250527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 354
Target Start/End: Complemental strand, 20058149 - 20058104
Alignment:
Q  309 tgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  20058149 tgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 20058104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 353
Target Start/End: Original strand, 43287851 - 43287964
Alignment:
Q  241 tgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 339  Q
    |||||||||||||||||| ||||||||||| | ||||||  ||||||||||||  | ||||||||| | ||||||  |||||  | | |||||||||||     
T  43287851 tgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgac 43287950  T
Q  340 tatgtcacgcctca 353  Q
    | ||||||||||||    
T  43287951 tttgtcacgcctca 43287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 383
Target Start/End: Original strand, 4747173 - 4747332
Alignment:
Q  221 tgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagata 319  Q
    ||||||||| | ||| |||||||||||||||  |||||||||||||||  || |||||| |||||||||| || |||||||| ||| | |||||   ||     
T  4747173 tgtgtttatgagattcaagttgttctgtcac--ctgatatgattcatacaagcgaagaacctgttgtatcttgggaggatatacgcttatgaggtccat- 4747269  T
Q  320 aaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 383  Q
     |||||| || |||||||| |  |||||||||||| |||   ||||||||| ||||||||||||    
T  4747270 gaatccttaa-gacagtgacttcgtcacgcctcagattatttaatggtttactgttttgcaggt 4747332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 231 - 423
Target Start/End: Original strand, 18594807 - 18595000
Alignment:
Q  231 aaatttaagttgttctgtcacct-ctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| |||||||||||||||| | | ||||||||||| | ||||||||||||||||||||| ||| |||||||| | |||||| ||||||||| ||||    
T  18594807 aaatttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaa 18594906  T
Q  330 ggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatc 423  Q
    |||||||||  |||||||||||||| ||| | ||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18594907 ggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatc 18595000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 259 - 423
Target Start/End: Original strand, 39292120 - 39292284
Alignment:
Q  259 atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttta 358  Q
    |||||||||| | | ||||||||||||||| |||  ||||||||||| | |||||| ||||||||||| ||||||||||| ||| |||| |||||| |||    
T  39292120 atgattcataacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcacacctcaggtta 39292219  T
Q  359 gagaatggtttattgttttgcaggttacatgagttgttgatagaagatgttgatagagttgtatc 423  Q
    || ||||||||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||    
T  39292220 gataatggtttattgttttgcaggttacataagtcgttgatagaagatattgatagggttgtatc 39292284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 13291940 - 13292037
Alignment:
Q  225 tttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaa 321  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||| | |||||| ||||||    
T  13291940 tttatcaaattcgagttgttctatcacctctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 26703113 - 26703018
Alignment:
Q  260 tgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| ||| |||||||| |||||||| || |||||||||||  | |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  26703113 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcag 26703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 260 - 354
Target Start/End: Complemental strand, 26972846 - 26972751
Alignment:
Q  260 tgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| ||| |||||||| |||||||| || |||||||||||  | |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  26972846 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcag 26972751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 127700 - 127822
Alignment:
Q  238 agttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 337  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||  | |||||| ||||||||||||||||||||||    
T  127700 agttgttctgtcacctctgacatgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacagtg 127799  T
Q  338 agtatgtcacgcctcagtttaga 360  Q
    | ||||||||||||||| |||||    
T  127800 actatgtcacgcctcaggttaga 127822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 110121 - 110236
Alignment:
Q  238 agttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 337  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||  | |||||| ||||||||||||||||||||||    
T  110121 agttgttctgtcacctctgacatgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtg 110220  T
Q  338 agtatgtcacgcctca 353  Q
    | ||||||||||||||    
T  110221 actatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 1789024 - 1788900
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  1789024 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 1788925  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| |||||||||||||||    
T  1788924 ggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 41740090 - 41739941
Alignment:
Q  91 aagcataccaaaa-tatatactttctttt-tagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacgaaagctctttcttt 188  Q
    ||||||||||||| |||||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  41740090 aagcataccaaaaatatatactttctctcatagcaatttggagtgacacttcctgatcagaaaaataccacttttccaccaacacaaaaactctttcttt 41739991  T
Q  189 ctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaa 238  Q
    |||  ||||||||||||||  ||||||| |    ||||||||||||||||    
T  41739990 cttctcaatttttcttcctatgttacattttacatgtttatcaaatttaa 41739941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 17028375 - 17028501
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 357  Q
    ||||||||||| | ||||||||||||  ||||||| ||||||||||||   |||||| ||||||||||||||||||||||| | ||||||||||||| ||    
T  17028375 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt 17028474  T
Q  358 agagaatggtttattgttttgcaggtt 384  Q
    | | ||| || | ||||||||||||||    
T  17028475 acataatagtattttgttttgcaggtt 17028501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 258 - 384
Target Start/End: Original strand, 17558811 - 17558937
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 357  Q
    ||||||||||| | ||||||||||||  ||||||| ||||||||||||   |||||| ||||||||||||||||||||||| | ||||||||||||| ||    
T  17558811 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt 17558910  T
Q  358 agagaatggtttattgttttgcaggtt 384  Q
    | | ||| || | ||||||||||||||    
T  17558911 acataatagtattttgttttgcaggtt 17558937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 258 - 354
Target Start/End: Complemental strand, 39655796 - 39655700
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    ||||||||||| | | |||||||||||||||| || |||||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||||    
T  39655796 tatgattcataacggagaagaactgttgtatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 39655700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 258 - 354
Target Start/End: Complemental strand, 21185418 - 21185322
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    ||||||||||| | |||||||||| || ||| ||| |||||||||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  21185418 tatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 319 - 402
Target Start/End: Complemental strand, 17088806 - 17088721
Alignment:
Q  319 aaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttac--atgagttgttgataga 402  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||| |||  ||||| ||||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcaggttagataattgtttattgttttgcaggctacatatgagatgttgataga 17088721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 38678679 - 38678800
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||||||||| ||| |||||||||| | |||||  ||||||||||||||  ||||||||||| | |||| | ||| ||||||||||    
T  38678679 aaatttgagttgttctgtcacctccgattatgattcataacggggaa--actgttgtatcctgtaaggatatgcgcttatgagacggatcaaatcctcaa 38678776  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
     |||| ||| |||||||||||||||    
T  38678777 agaca-tgactatgtcacgcctcag 38678800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 38676300 - 38676378
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctt 308  Q
    |||||| ||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||| |||||||||| ||||    
T  38676300 aaatttgagttgttctgtcacctccgattatgattcataacggggaagaattgttgtatcctgggaggatatgctcctt 38676378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 354
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  317 ataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    |||||||||||||||||||||| |||||||||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 57
Target Start/End: Complemental strand, 41740187 - 41740144
Alignment:
Q  14 atatatcttgggagtatatatgataataacatagtgctttttac 57  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||    
T  41740187 atatatgttgggaatatatatgataataacaaagtgctttttac 41740144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 223 - 422
Target Start/End: Original strand, 2353181 - 2353382
Alignment:
Q  223 tgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaa 321  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||| || | | |||||| ||| ||    
T  2353181 tgtttatcaaattcaagttgttctgtcacctcttatatgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcggat-aa 2353279  T
Q  322 atcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttac--atgagttgttgatagaagatgttgatagagttg 419  Q
    ||||| ||||||| ||| |   ||| ||||||| ||| | || |||||||| |||||||||||||  ||||||||||| | ||  |||||||||||||||    
T  2353280 atccttaaggacaatgacttcatcatgcctcaggttatataacggtttattattttgcaggttacatatgagttgttggtggagaatgttgatagagttg 2353379  T
Q  420 tat 422  Q
    |||    
T  2353380 tat 2353382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 210 - 418
Target Start/End: Complemental strand, 26445239 - 26445029
Alignment:
Q  210 gttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctt 308  Q
    |||| |||||||||||||| |||||| || ||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||  |     
T  26445239 gttatatctcctgtgtttagcaaattcaaattgttatgtcgcctctgatatgattcatatcagggaagaacatgttgtatcttgacaggatatacgatta 26445140  T
Q  309 tgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttac--atgagttgttgatagaagat 406  Q
    |||||| ||| ||||||| ||||||||||| | ||||| ||||||  ||| | |   ||||||| |||||||||||||  ||||||||||| |  | |||    
T  26445139 tgaggcggat-aaatccttaaggacagtgactttgtcatgcctcatgttatatatccgtttattattttgcaggttacatatgagttgttggtgaaggat 26445041  T
Q  407 gttgatagagtt 418  Q
     |||||||||||    
T  26445040 attgatagagtt 26445029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 338
Target Start/End: Complemental strand, 9372365 - 9372229
Alignment:
Q  204 tcctgggttacatc--tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggata 300  Q
    ||||||||||||||  || |||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||    
T  9372365 tcctgggttacatcagtcatgtgtttatcaaatttaagttgctttgtcacctctcatatgattcatatcagggatgaacctgttgtatcctgggacgata 9372266  T
Q  301 tgcgcctttgaggcagataaaatcctcaaggacagtga 338  Q
    ||||| | |||||| ||  ||||||| |||||||||||    
T  9372265 tgcgcttatgaggc-gaataaatccttaaggacagtga 9372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 237 - 383
Target Start/End: Complemental strand, 19930153 - 19930008
Alignment:
Q  237 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 335  Q
    |||||||||| ||||||||||| |||||||| |||||||||||| |||||||| ||| |||||||||||| | |||||| ||| ||||||| |||||| |    
T  19930153 aagttgttctatcacctctgatgtgattcatctcagggaagaacatgttgtat-ctgggaggatatgcgcttatgaggcggat-aaatccttaaggacgg 19930056  T
Q  336 tgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 383  Q
    ||| | ||||||||||||  ||| | || |||||| | ||||||||||    
T  19930055 tgactttgtcacgcctcatgttatataacggtttactattttgcaggt 19930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 334
Target Start/End: Original strand, 14658109 - 14658225
Alignment:
Q  218 tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcag 316  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||||||| | || ||||||  ||||||||||||  ||||||||||| | ||| ||||    
T  14658109 tcctgtgattatcaactttaagttgttctgtcacctctgacatgattcatgttagagaagaatttgttgtatcctggaaggatatgcgcttatgatgcag 14658208  T
Q  317 ataaaatcctcaaggaca 334  Q
    || ||||||| |||||||    
T  14658209 at-aaatccttaaggaca 14658225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 16366537 - 16366445
Alignment:
Q  179 ctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaa 276  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||| |||   |||  |||||||||||||||| ||||||||||||||| ||||||    
T  16366537 ctctttctttcttcccaatttttcttcctg--ttacatctcctgtgtatat---attcgagttgttctgtcacctttgatatgattcatattagggaa 16366445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 293
Target Start/End: Original strand, 14654840 - 14654929
Alignment:
Q  207 tgggttacatct--cctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctga 293  Q
    ||||||||||||  |||||| ||||||| || ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||    
T  14654840 tgggttacatctttcctgtgattatcaacttcaagttgttctgtcacctctgacatgattcatgtcagagaagaacctgttgtatcctga 14654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 16366608 - 16366541
Alignment:
Q  16 atatcttgggagtatatatgataataacatagtg-ctttttacgatggacaataccagaagcacgctt 82  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||||||   ||||||||||    
T  16366608 atatcttgggagtatatatgataataacgtagtgtttttttacgatggacaatacatcaagcacgctt 16366541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 281 - 383
Target Start/End: Complemental strand, 42253635 - 42253534
Alignment:
Q  281 tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgca 380  Q
    |||||||||||  |||||||||||| | |||||| | |||| |||| ||||||||||| | ||||||||||||  ||| | || |||||| | |||||||    
T  42253635 tgttgtatccttggaggatatgcgcttatgaggcgggtaaa-tccttaaggacagtgactttgtcacgcctcatgttatataacggtttactattttgca 42253537  T
Q  381 ggt 383  Q
    |||    
T  42253536 ggt 42253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 2590493 - 2590617
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||  |||||||||||||    
T  2590493 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaa 2590592  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| |||||||||||||||    
T  2590593 ggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 238 - 360
Target Start/End: Original strand, 21189401 - 21189524
Alignment:
Q  238 agttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 336  Q
    |||||||||||||||||  | ||||||||||| | ||||| ||||||||||||| | |||||||||||| | |||||| |||||||||||||||||||||    
T  21189401 agttgttctgtcacctccagttatgattcataacggggaataactgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagt 21189500  T
Q  337 gagtatgtcacgcctcagtttaga 360  Q
    || ||||||||||||||| |||||    
T  21189501 gactatgtcacgcctcaggttaga 21189524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 241 - 353
Target Start/End: Complemental strand, 18739226 - 18739113
Alignment:
Q  241 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 339  Q
    |||||||||||||| ||| |||||||||| | ||||||||| |||||||  || |||||||||||| | |||||| |||||||||||||||||||||||     
T  18739226 tgttctgtcacctccgattatgattcataacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgac 18739127  T
Q  340 tatgtcacgcctca 353  Q
    ||||||||||||||    
T  18739126 tatgtcacgcctca 18739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 214 - 301
Target Start/End: Original strand, 27107279 - 27107367
Alignment:
Q  214 catctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatat 301  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||| ||||| | ||||||||||||| |||||||||||| ||||||||    
T  27107279 catctcctgtgtttatcagattcaagctgttctgtcacctctgatgtgatttacatcagggaagaacatgttgtatcctgggaggatat 27107367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 241 - 337
Target Start/End: Original strand, 1043148 - 1043244
Alignment:
Q  241 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 337  Q
    |||||||||||| | ||| |||||||||| | ||||||||| ||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||    
T  1043148 tgttctgtcacccccgattatgattcataac-gggaagaacggttgtatcctgggaggatatgcgcctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 231 - 384
Target Start/End: Complemental strand, 14433725 - 14433570
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctca 328  Q
    |||||| |||| ||||||||||| || | |||||||||| | ||||||||| ||||||||| || || ||| ||  | | |||||| |||||||||| ||    
T  14433725 aaatttgagttattctgtcacctttggttatgattcataacggggaagaacatgttgtatcttgggaagatgtgtacttatgaggcggataaaatccaca 14433626  T
Q  329 aggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtt 384  Q
    |||||||||| ||||||||||||||| ||| | ||  || ||||||||||||||||    
T  14433625 aggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtt 14433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 35969398 - 35969278
Alignment:
Q  231 aaatttaagttgttctgtcacctc-tgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||| || | || ||   ||||||| |||||||| ||||||||| ||||    
T  35969398 aaatttgagttgttctgttacctcctgttatgattcataacggggaagaactgtt-taacatgtga---tatgcgcttttgaggcggataaaatcttcaa 35969303  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| |||||||||||||||    
T  35969302 ggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 8424424 - 8424480
Alignment:
Q  216 tctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcag 272  Q
    ||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  8424424 tctcctgagtttatcaaatttaagttgttctgtcatctctagtatgattcatatcag 8424480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 262 - 321
Target Start/End: Complemental strand, 27083183 - 27083123
Alignment:
Q  262 attcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaa 321  Q
    |||||||| |||||||||| |||||||||||| |||||||||||| | |||||| ||||||    
T  27083183 attcatattagggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcggataaa 27083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 365 - 423
Target Start/End: Complemental strand, 8388439 - 8388379
Alignment:
Q  365 ggtttattgttttgcaggttacat--gagttgttgatagaagatgttgatagagttgtatc 423  Q
    |||||||| ||||||| |||| ||  |||||||| || |||||||||||||||||||||||    
T  8388439 ggtttattattttgcaagttatatatgagttgttaatggaagatgttgatagagttgtatc 8388379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 27083263 - 27083189
Alignment:
Q  198 ttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctg---tcacctctgatatgattcatat 269  Q
    |||| ||| ||||||  |||| |||||||||||| ||| ||||||||| |   ||||||||||||||||||||||    
T  27083263 ttttattcttgggttgaatcttctgtgtttatcagattcaagttgttcagcagtcacctctgatatgattcatat 27083189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 8e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 231 - 354
Target Start/End: Original strand, 11673994 - 11674117
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||||| ||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  11673994 aaatttgagttgttctgtcacctccgattatgattcataac-gggaacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 11674092  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| |||||||| ||||||    
T  11674093 ggacagtgactatgtcacacctcag 11674117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 207 - 385
Target Start/End: Original strand, 13815707 - 13815885
Alignment:
Q  207 tgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgc 305  Q
    |||||| |||||| ||||||||||| ||| ||| |||||||||||||||||| ||||||| || |||||||||| |||||||||||| || |||||||||    
T  13815707 tgggttgcatctcttgtgtttatcagattcaagctgttctgtcacctctgatgtgattcacattagggaagaacatgttgtatcctgggaagatatgcgc 13815806  T
Q  306 ctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtta 385  Q
     | |||||| ||  ||||||| ||||||||||| | ||||||||||||  ||| | ||||| ||| ||||| ||||||||    
T  13815807 ttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggtta 13815885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 31210193 - 31210076
Alignment:
Q  238 agttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 336  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||||||| || | |||||||||| | | |||||| |||||||||||||||||||||    
T  31210193 agttgttctgtcacctccgattatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacagt 31210094  T
Q  337 gagtatgtcacgcctcag 354  Q
    || |||||||||||||||    
T  31210093 gactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 354
Target Start/End: Original strand, 15569566 - 15569682
Alignment:
Q  238 agttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 336  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| || | |||||| ||| ||||||  |||||||||    
T  15569566 agttgttctgtcacctctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggacagt 15569664  T
Q  337 gagtatgtcacgcctcag 354  Q
    || | |||||||||||||    
T  15569665 gactttgtcacgcctcag 15569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 238 - 354
Target Start/End: Complemental strand, 31206744 - 31206627
Alignment:
Q  238 agttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 336  Q
    |||||||||||||||||  | ||||||||||| | |||||||||||||||||||||  ||||||||||| | |||||  |||||||||||||| ||||||    
T  31206744 agttgttctgtcacctccagttatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagt 31206645  T
Q  337 gagtatgtcacgcctcag 354  Q
    || |||||||||||||||    
T  31206644 gactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 39426576 - 39426452
Alignment:
Q  231 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 329  Q
    |||||| ||||||||||||||||| | | |||||||||| ||||||||||||||| |||| || |||||||| ||| | |||| | ||||||||||||||    
T  39426576 aaatttgagttgttctgtcacctccggttatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggataaaatcctcaa 39426477  T
Q  330 ggacagtgagtatgtcacgcctcag 354  Q
    ||||||||| ||| |||||||||||    
T  39426476 ggacagtgactatatcacgcctcag 39426452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 222 - 383
Target Start/End: Complemental strand, 2609735 - 2609574
Alignment:
Q  222 gtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataa 320  Q
    ||||||| ||||||  |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||| | |||| ||||| |    
T  2609735 gtgtttaacaaattcgagttgttctgtcacatctgatatgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgagacagat-a 2609637  T
Q  321 aatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 383  Q
    ||| || ||||| ||||| |  |||||||||||| ||| | || || ||| | ||||||||||    
T  2609636 aatacttaaggatagtgacttcgtcacgcctcaggttatataaaggcttactattttgcaggt 2609574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 282 - 384
Target Start/End: Complemental strand, 22301224 - 22301122
Alignment:
Q  282 gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcag 381  Q
    |||||||| || |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||| ||| | ||| || | |||||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcag 22301125  T
Q  382 gtt 384  Q
    |||    
T  22301124 gtt 22301122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 231 - 354
Target Start/End: Complemental strand, 3850665 - 3850540
Alignment:
Q  231 aaatttaagttgttctgtcacctctga-tatgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctca 328  Q
    |||||| ||||||||| |||||||||  ||||||||||| |  ||||||||| |||||||| |  |||||||||||| | ||||||  |||||||| |||    
T  3850665 aaatttgagttgttctatcacctctgggtatgattcataccgaggaagaactcgttgtatcataggaggatatgcgcttatgaggcgtataaaatcatca 3850566  T
Q  329 aggacagtgagtatgtcacgcctcag 354  Q
    |||||||||| |||||||||||||||    
T  3850565 aggacagtgactatgtcacgcctcag 3850540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 233 - 352
Target Start/End: Complemental strand, 32352551 - 32352432
Alignment:
Q  233 atttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaagg 331  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||  |||||| ||||| |||||||||||| | |||||| ||  ||||||| ||||    
T  32352551 atttaagctgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtgtcctgggaggatatgcgcttatgaggc-gaataaatccttaagg 32352453  T
Q  332 acagtgagtatgtcacgcctc 352  Q
    ||||||| | |||||||||||    
T  32352452 acagtgactttgtcacgcctc 32352432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 213 - 321
Target Start/End: Original strand, 15169910 - 15170019
Alignment:
Q  213 acatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttga 311  Q
    |||| ||| ||| |||||||||| |||||||||||||| |||||| ||||||||| | || |||||| ||||||||||||| |||||||||||  | |||    
T  15169910 acatttccagtgattatcaaattcaagttgttctgtcatctctgacatgattcatgttagagaagaacctgttgtatcctgtgaggatatgcgtttatga 15170009  T
Q  312 ggcagataaa 321  Q
    ||| ||||||    
T  15170010 ggctgataaa 15170019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 258 - 354
Target Start/End: Original strand, 82642 - 82738
Alignment:
Q  258 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 354  Q
    ||||||| ||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||    
T  82642 tatgatttataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctcag 82738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 209 - 321
Target Start/End: Original strand, 448692 - 448802
Alignment:
Q  209 ggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctt 308  Q
    |||| |||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |||||| |  |||||||||| |||||||||||||  |     
T  448692 ggttgcatctcctgtgtttatcagattcaagttgttttgtcacctttgatatgattcatattagggaaca--tgttgtatcccgagaggatatgcgatta 448789  T
Q  309 tgaggcagataaa 321  Q
    |||||||||||||    
T  448790 tgaggcagataaa 448802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 215 - 314
Target Start/End: Original strand, 12090 - 12190
Alignment:
Q  215 atctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgagg 313  Q
    ||||| ||||||||||| |||  |||||||||||||||||||||||||||||||| |||||||||| |||||||||||  || ||||||||| | |||||    
T  12090 atctcatgtgtttatcagattggagttgttctgtcacctctgatatgattcatataagggaagaacttgttgtatcctaggatgatatgcgcttgtgagg 12189  T
Q  314 c 314  Q
    |    
T  12190 c 12190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 258 - 338
Target Start/End: Complemental strand, 5022 - 4942
Alignment:
Q  258 tatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 338  Q
    ||||||||||||||  ||||||| ||||||||| || ||||||||| || | |||||||||| ||||||| ||| |||||||    
T  5022 tatgattcatatcatagaagaacctgttgtatcttgggaggatatgtgcttatgaggcagat-aaatccttaagaacagtga 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University