View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20214_low_7 (Length: 416)
Name: NF20214_low_7
Description: NF20214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20214_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 400
Target Start/End: Complemental strand, 45104950 - 45104555
Alignment:
| Q |
1 |
aaagcaaatatgcataaagtgactacaaaatactaacaattttaatttctttttatctataataatctatgcgtatagatctttggataaaagcttcttc |
100 |
Q |
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| T |
45104950 |
aaagcaaatatgcataaagtgattacaaaatactaacaattttaatttctttttatctataataatctatgcgtatagatatttggataaaagcttcttc |
45104851 |
T |
|
| Q |
101 |
tttaattttctcgattcattggctgtcattgttagttattaatataaaggtctttcaagctacaaagacccttgacattgcatatattcatacattgatc |
200 |
Q |
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||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45104850 |
ttt-----tctctattcattggctgtcattgttagttattaatataaaggtctttcaagctacaaagacccttgacattgcatatattcatacattgatc |
45104756 |
T |
|
| Q |
201 |
cactaagt-ggttattaaggctagtggtttcaataatcttatctttctcaatacattcatacctatccaaatatgcattgcatccatatact----cata |
295 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
45104755 |
cactaagtgggttattaaggctagtggtttcaataatcttatctttctcaatacattcatacctatccaaatatgcattgcatccatatactcatacata |
45104656 |
T |
|
| Q |
296 |
ccactgatacacttctacatcaatatatatgtaggggaatacatagctaggcatattcctccagttctctaggttgtccatttcgttctgttcgagtttt |
395 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
45104655 |
ccactgatacacttctacatcaatatatatgcaggggaataca----taggcatattcctccagttccctaggttgtccatttcgttctgttcgactttt |
45104560 |
T |
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